HsaINT1047015 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100771844-100773493:+
Coord C1 exon
chr7:100771844-100772020
Coord A exon
chr7:100772021-100773284
Coord C2 exon
chr7:100773285-100773493
Length
1264 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
AATGCTCTCATTTTCTTTAGCTA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GACCCTTCTCTCAATGTCACCAGGTGGTGCCTCCCCAGTCCAGCTTTGCCAGTTGCGTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCAGGCTGGCCAGGCCCCTGCCTGGCGGAACAGAACCTTCTGCC
Seq A exon
GTGAGTGACTGGCCACCTGTTCCCACAGCCCATAGGCACCCTCCAGAATTCTGCCCTCCCTTTCTTCCTCTAAATTCTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTACCTCCTGTGTTCAAGCCAAGATGGGTGAATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGTCAACATGGTGAAACCCCGTCTCTATTAAAAATACAAAACTTGGCCAGGTGTGGTGGCAAGCACCTGTAATCAGCTACTCAAGAGGCTGAGGTGGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACAAGAGTGAAACAAAAAACAAGAGTGAAAAACAAAACAAAACAAAAAGTTCTGGCAGTAGATGGTGGTAATGGCAGCACGACAATGTGACTGTACTTAGTGCTGTTGAAGTGTACATTTAAAAAATTGTTGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGAGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATGGCGTGAATCTGGGAGGTGGAGCTTGCAGTGACCCAAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTCTACAAGAAAAAAAAAATTGTTAAAATTGTAGATTTTATGTCTGTTTTTTTTTTGTTTGTTTTTTTTTTTTTTTGCTTTTGAGAGTCTCGCTGTCGCCCAGGCTGGAGTGCAGTGGTCTGACCTCGCCTCATTGCAACCTCTGCCTCTCAGGTTCAAGAGATTCTCGTGTCTCAGCCACCCAAGTAGCTGGGACTACAGGCGTGTGCCACCCCAAGTAGCTGGGACTACAGGCGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGTCGGTTTTTCACCATGTTGGCCAGCCTGTTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACATGTGCGAGCTACCGCTCCTGGCCACTACTAGGAGCTTTTGATGCCCCAAGGTTTGGGGGCTGGACATGCCACCCCACTCTTCCTAATGCTCTCATTTTCTTTAG
Seq C2 exon
CTATGAGGTGCCCACCTGGCAGCAGCTACAGCCCCTGCAGCAGCCCCTGCCCAGACACCTGCAGCAGCATAAACAACCCGAGGGACTGCCCCAAAGCACTGCCCTGTGCTGAGAGCTGTGAATGTCAGAAAGGCCACATCTTGAGTGGAACCTCCTGCGTGCCCCTTGGCCAGTGTGGCTGCACTGACCCAGCGGGCTCCTACCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(78.7=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCCAGCTTTGCCAGTTG
R:
GTGGTAGGAGCCCGCTGG
Band lengths:
349-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains