HsaINT0184457 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100374062-100377372:+
Coord C1 exon
chr7:100374062-100374186
Coord A exon
chr7:100374187-100377067
Coord C2 exon
chr7:100377068-100377372
Length
2881 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TGATTCTTTTCCCTTCCCAGTTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTCTGCGGCATGTGTGGGAACTTCAATGATGAGGAAGAGGACGAACTAATGATGCCCAGCGATGAAGTAGCAAATAGTGACAGTGAATTTGTGAACAGTTGGAAAGATAAGGACATTGACCCAAG
Seq A exon
GTAGTGGTCCCCTAAGACCCTCTAGGTTTTCTTTCTTTTTCTTTCTTTGTCTTTCTTTCTTTCTGCCTTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTTCCTTCCTTTCTTCCTTTCTCTCTTTCTCTTTCTTTTCTTCCTCTCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCTGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTTCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCTCTCCTTTCTTTCGTTCTTTTTTTTTCTGAGACAGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTATGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGCTCAAGTGATACTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCGCCACCACGCCTGGCTACTTTTTGTAGTTTTTAGCAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAGCTCCTGACCTCAGGCAATGTGGCCGCCTTGGCCTCCCGAAGTGCTGGGTAATCATGAGCGACTGCACCTGGACCCTCTAGCTTTTCTTTTTTTCTTTTTCTTTTTGAGATGGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCTTCCGGGGTTCAAGCAATTCTCGTGCCTCAACCTCCCGAGTAGCTGGGATTACAGGTGCACACCACCACGCCCCACGTCTGGCTAATTTGTGTATTTTAGGTAGAGACGGAGTTTCATCATGTTGGTCAGGCTGGCCTTGAACTCCTGACCTCAAGTGATCCGCCCCACTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACTGTGCCTGGCCACCCCTCCAGCTTTTCATAGCAACATGAGCTAGGGAGCCAGACTGTAGGGCACACCTGGGGCAGGAAGACCAGAATGTTCCTTTTTTCTTCTTCAATTTTTAAATTTTTTGTAGAGACAGGGTCTTGCCACTTTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAATGATCCTCCCGCCTCGGCCCCCCAAAGTGCTGGGATTACAGGCCAGAATGTTGCTTTGTGTGTGTGATTTGAGGGCGATGACTTCTGGGCATTCTGGGGCGATGTGTGTAATTGATCCATCTCAAGGCTGCTAGAACCCACTTGAGGAAATGTGAAAGCTTCCTTTCCTCGCTTAGAAACCTTGGAGGAGGAGCAGGAGCAGAGGCTCATGCCTGTGATTCCAGCACTTTGGGAGGCCAAGACTGGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTAGGCAGCATAGCAAGACCCCATCTTTACAAAAAAATTAAAAACAAAAATTAGCCAGCCATGGTGGCACATGCCTGTAGTCCCAGCTATTTGGGAGGCTTCAGCAGGAAGATTGGTTGAGTCCGAGATTTGAAGGCTACAGTGAGCTATGATTGCATCACTGCACTCCAGCCTGGATGACAGAGCAAGATGCTGTCTTAAAAAGTTTAAAAACAGCCGGGTGCAGTGGCTCACGCCTCTAATCCCAACACTTCGTGAGGCCAATGTGGGAGGATTGCTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACCTCATCTCTACAGAAAAAAAAAAAAAAGAAAAGAAAGAAAAATAACCAGGTGTGGTTAGTCCCAGCTACTCACAAGGCTGAGGTGGGACGATCCCTTGGGCCTGGGAGATTGAAGTTGCAGTGAGCCTTGATCACACCACTGTACTCCAGACTGGGCGACAGATTGGGAAGCAAAAAAGGAAATCTGAGAGAAGACGAGGCCGATGGAAGATTGGCCAGAGCTCAGACCAGCTTCCCTGTGAACACCAGAAGGGTTAGGAGGGTGGGGAATCCCTGAGAGGTCTCTCTGGGTCATTTGGGAGCACCAGATCATTGTCATAGGGCCAGGCGTGGTGGCTCAGGCCTGATATCTCAGCACTTCGCGAGGCCGAGGCGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTTGCCAACATGGTGAAACCTCGTCTCTATTAAAAATACAAAAACTAGCCGGTCATGGTGGCGGGTGCCTGTAATCCCAGCTACTCAAAAGGCTAAGGCAGGAGAATCGCTTTAACCTGAGACGTAGAGGTTGCAGTGAGCCAAGATCACACCACTGAACTCCAGCCTGGGCGATACAGTGGGACCTTGTCTCCAGATAAACCAAAACCAAAAATTAGCTAGGCATGGTGCCGGGTGGCTGTAATCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTCTCAGTGAGCCAAGATTGCACTACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAATTGGTCGGGCGTGGTGGTGGGTGCCTGTAGTCTCAGCAACTCGGAAGGCTGAGTGAGACAGGAGAATCGCTTGAACATGGGAGGGAAGGCAGAGGTTGCAGTGAGCTGAGACTGTTGCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCCCCTAAAGAAAAAAAAATTTTGTGTCATAGTAGGGGGACGGCTGTCCCTAGGCTGATTCTTTTCCCTTCCCAG
Seq C2 exon
TTGTCAGAGTCTCCTGGTAGATGAGCAGCAGATTCCAGCGGAACAGCAGGAGAACCCGAGTGGAAACTGCAGGGCGGCCGACCTCCGCAGGGCGCGGGAAAAGTGCGAGGCAGCGCTCCGGGCTCCTGTGTGGGCCCAGTGCGCCTCCCGCATAGACCTCACGCCCTTCCTGGTGGACTGTGCAAACACCCTCTGTGAGTTCGGAGGTCTCTACCAGGCCCTCTGCCAGGCTCTGCAAGCCTTCGGGGCCACCTGCCAGAGCCAGGGGCTCAAGCCCCCACTCTGGAGAAACAGCAGCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.940
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(13.5=50.0)
A:
NA
C2:
PF087426=C8=WD(100=72.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)