DreINT0022889 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26080802-26082335:+
Coord C1 exon
chr7:26080802-26080929
Coord A exon
chr7:26080930-26082326
Coord C2 exon
chr7:26082327-26082335
Length
1397 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTTGCTTTTCAGACACAGTAATT
3' ss Score
-33.65
Exon sequences
Seq C1 exon
GTGTGCGGGATGTGCGGTAACTACAACGGAGATTCCTCTGATGATAACTTAAAGCCAAATGGCAAACCAGCGAATAACTCTATTGAATTTGGTGACAGCTGGAAGGCAGAGGGTGACAGTGATCCTGG
Seq A exon
GTGAGTGTTAGTTCATTCGGTTCCTCTTCACCCCCTTCTATAATTCAGTACTAAACAAACCTAAATAGATAATAAAATTATAAATGTGTTGAATTTGAAATAATCAGTTACTAACCGGTCAATAATCAGTAAGCATAACTACACTCAACAAAAGAATTAGCTGCTTGTTCAAAATGCTTATTTGAAATAAGTTGAAGAAAAAAAAACACAATTATTGCAATTTTTTGTGACAACTTAATTGTTTTACGTTCAACCCACTTAAATTTGTAAAATAAATTAAGTTAACTTAATTGATTTTTGTTTGGACATCTTGAATGAATGGTGGAGAAGCTTGCAGGTTTACATTGTAGTTACTGTAATTAAATTACTTTTCTGATAAAAAAGGGATTACTTTTAATTTTTAGGTAACTTAATCACAATTACTGGGTGATCAGGTTTTCCCTAATAAATTATTTATATTATTAATTTCTAATTTGTTTATTTTTCATTTTATTTTGTTAAAAAAAAAACAAAATTAAAGAGATTTGGGAAGATTGAATTTTTTAAAAAACAAAATAAGACAAAAACAGACAAATTAATTCGATTTACTGTTATCTGCTGTGCTGTTGTACCAGGAAAAAAAGCAACACTGTGTTGTCATTTGTTTTAAGTACTTTTACATCATATGGAAATTGTGTGAGGCAATGCAAATGCAATGCAAGTAGCACGATGCAAATGACCCTCAAATCGGTGGGTCATTTGCATCGTAAACGGTGCGACCCCATAATTGGTCCAGGTTACCAGGGACTTATTGCCGATGGACAGGTGTTGATATGTGACTGCAGACGATTACATAAGGCTGCATTAAGTTCCTTACTTTTTTTTATCCCACCACGTACGCATCACTTTGATTTCTTTTGTCTAAGAAAGAGATATCTCATATTAACTCTCTTAATACATTTAACAGTACCGTATAACTCAGAGTAATTGTATTTTTTTTGTTATACAAATATATTGCTAAATAATTATATTTTTTAAGTAAAGAAGGTTAAATTCATGAAGTATTGCACATTTAAAGAAAAAAATAATTTAATGAAAAATGAGTTCATGAAAATATAAGGTGTACATTTATAGAAGCAGAGTATTTGTCTCATATGTTGGATAATATCAACAATATTAGTCTAAAACAATGAAAAAAGACATTTGTCAATATATGGTGTGTATGAAATGTTTTGAAATGTTTTTAGGTTTTTAAATGTTCATTCTTATATCAAATTGAAAGTTCCTGAAGTTTGACTTAAATTTAAAGAGTTTAATACCTATTGTTTATGCATTGAGATTAATATAGATTTGAGTTAGTATTGAGTCAAGTAATTAAATTACTTTTTGAGTAATTAAGTTGCTTTTCAGACACAGTA
Seq C2 exon
ATTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(13.6=48.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]