BtaINT0163473 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36376361-36377090:-
Coord C1 exon
chr25:36376966-36377090
Coord A exon
chr25:36376651-36376965
Coord C2 exon
chr25:36376361-36376650
Length
315 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GACCCCCTTTCCCTTCCCAGTTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
ACCTGCGGCATGTGCGGGAACTTCAACGGTGAGGAAGAGGATGAACTACTGATGCCTAATGATGAGCTAGCCCCAGATGACATCACGTATGTGGACAGCTGGCAAGATAAGGAGATCGACCCAAG
Seq A exon
GTAATTGTCCCCAAAGACTCTCTCCCTTTGTTGGCATAGGAATGCGAGCTGGGATTCTAGACCGTATGGCCCACCCAGGATGGAAAGACTGGAGTGGTCCTCTATGCGTATCGCTTGACAGGGGGTGGCCTCTGGGTCTTCCTGTCTTGGCTTCAAAACGTGGGAGGTGACGGGGGCCACGTGGAAAGCTGGTCAGAGCCCAGGCCAGCTTCCAGGTGAAGACAGGGGTGGTCTAGAGGGCGGTTTGGGAGCGCCAAGTCGTTTTCATAGATGAGGCCGTGGCTGTCCCTGTGATGACCCCCTTTCCCTTCCCAG
Seq C2 exon
TTGCCGAGATGATGACAAGGCCGAAGAAGAATCGGAGGAGCCAGAAACGACCTGCCAGCCAGCTGACCTGGAGAGAGCCAAGGAGCAATGCCAGGCAGTCTTTCAGACTCCAGGCTGGGCAAGGTGTGCCAGCCGCGTGATCCTCAGTCCCTTCTTGGTCAGATGCACCGACAGCCTCTGTGAGTTTGGAGGCCTGAGCAGCACCCTCTGCCAGTCTCTGCAAGCCTTCGCGACCGCCTGCCAAGCCCGGGGCATCAGGCCTCCCATCTGGAGAAACAGCAGCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(13.5=50.0)
A:
NA
C2:
PF087426=C8=WD(100=76.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAGCCCCAGATGACATCA
R:
GCTGCTGTTTCTCCAGATGGG
Band lengths:
344-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]