HsaINT1047021 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100776440-100779750:+
Coord C1 exon
chr7:100776440-100776564
Coord A exon
chr7:100776565-100779445
Coord C2 exon
chr7:100779446-100779750
Length
2881 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TGATTCTTTTCCCTTCCCAGTTG
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTCTGCGGCATGTGTGGGAACTTCAATGATGAGGAAGAGGACGAACTAATGATGCCCAGCGATGAAGTAGCAAATAGTGACAGTGAATTTGTGAACAGTTGGAAAGATAAGGACATTGACCCAAG
Seq A exon
GTAGTGGTCCCCTAAGACCCTCTAGGTTTTCTTTCTTTTTCTTTCTTTGTCTTTCTTTCTTTCTGCCTTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTTCCTTCCTTTCTTCCTTTCTCTCTTTCTCTTTCTTTTCTTCCTCTCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCTGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTTCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCTCTCCTTTCTTTCGTTCTTTTTTTTTCTGAGACAGAATCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTATGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGCTCAAGTGATACTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCGCCACCACGCCTGGCTACTTTTTGTAGTTTTTAGCAGAGACGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAGCTCCTGACCTCAGGCAATGTGGCCGCCTTGGCCTCCCGAAGTGCTGGGTAATCATGAGCGACTGCACCTGGACCCTCTAGCTTTTCTTTTTTTCTTTTTCTTTTTGAGATGGAGTTTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCTTCCGGGGTTCAAGCAATTCTCGTGCCTCAACCTCCCGAGTAGCTGGGATTACAGGTGCACACCACCACGCCCCACGTCTGGCTAATTTGTGTATTTTAGGTAGAGACGGAGTTTCATCATGTTGGTCAGGCTGGCCTTGAACTCCTGACCTCAAGTGATCCGCCCCACTCAGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACTGTGCCTGGCCACCCCTCCAGCTTTTCATAGCAACATGAGCTAGGGAGCCAGACTGTAGGGCACACCTGGGGCAGGAAGACCAGAATGTTCCTTTTTTCTTCTTCAATTTTTAAATTTTTTGTAGAGACAGGGTCTTGCCACTTTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAATGATCCTCCCGCCTCGGCCCCCCAAAGTGCTGGGATTACAGGCCAGAATGTTGCTTTGTGTGTGTGATTTGAGGGCGATGACTTCTGGGCATTCTGGGGCGATGTGTGTAATTGATCCATCTCAAGGCTGCTAGAACCCACTTGAGGAAATGTGAAAGCTTCCTTTCCTCGCTTAGAAACCTTGGAGGAGGAGCAGGAGCAGAGGCTCATGCCTGTGATTCCAGCACTTTGGGAGGCCAAGACTGGAGGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTAGGCAGCATAGCAAGACCCCATCTTTACAAAAAAATTAAAAACAAAAATTAGCCAGCCATGGTGGCACATGCCTGTAGTCCCAGCTATTTGGGAGGCTTCAGCAGGAAGATTGGTTGAGTCCGAGATTTGAAGGCTACAGTGAGCTATGATTGCATCACTGCACTCCAGCCTGGATGACAGAGCAAGATGCTGTCTTAAAAAGTTTAAAAACAGCCGGGTGCAGTGGCTCACGCCTCTAATCCCAACACTTCGTGAGGCCAATGTGGGAGGATTGCTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACCTCATCTCTACAGAAAAAAAAAAAAAAGAAAAGAAAGAAAAATAACCAGGTGTGGTTAGTCCCAGCTACTCACAAGGCTGAGGTGGGACGATCCCTTGGGCCTGGGAGATTGAAGTTGCAGTGAGCCTTGATCACACCACTGTACTCCAGACTGGGCGACAGATTGGGAAGCAAAAAAGGAAATCTGAGAGAAGACGAGGCCGATGGAAGATTGGCCAGAGCTCAGACCAGCTTCCCTGTGAACACCAGAAGGGTTAGGAGGGTGGGGAATCCCTGAGAGGTCTCTCTGGGTCATTTGGGAGCACCAGATCATTGTCATAGGGCCAGGCGTGGTGGCTCAGGCCTGATATCTCAGCACTTCGCGAGGCCGAGGCGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTTGCCAACATGGTGAAACCTCGTCTCTATTAAAAATACAAAAACTAGCCGGTCATGGTGGCGGGTGCCTGTAATCCCAGCTACTCAAAAGGCTAAGGCAGGAGAATCGCTTTAACCTGAGACGTAGAGGTTGCAGTGAGCCAAGATCACACCACTGAACTCCAGCCTGGGCGATACAGTGGGACCTTGTCTCCAGATAAACCAAAACCAAAAATTAGCTAGGCATGGTGCCGGGTGGCTGTAATCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTCTCAGTGAGCCAAGATTGCACTACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAAAAAAAAAAATTGGTCGGGCGTGGTGGTGGGTGCCTGTAGTCTCAGCAACTCGGAAGGCTGAGTGAGACAGGAGAATCGCTTGAACATGGGAGGGAAGGCAGAGGTTGCAGTGAGCTGAGACTGTTGCATTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCCCCTAAAGAAAAAAAAATTTTGTGTCATAGTAGGGGGACGGCTGTCCCTAGGCTGATTCTTTTCCCTTCCCAG
Seq C2 exon
TTGTCAGAGTCTCCTGGTAGATGAGCAGCAGATTCCAGCGGAACAGCAGGAGAACCCGAGTGGAAACTGCAGGGCGGCCGACCTCCGCAGGGCGCGGGAAAAGTGCGAGGCAGCGCTCCGGGCTCCTGTGTGGGCCCAGTGCGCCTCCCGCATAGACCTCACGCCCTTCCTGGTGGACTGTGCAAACACCCTCTGTGAGTTCGGAGGTCTCTACCAGGCCCTCTGCCAGGCTCTGCAAGCCTTCGGGGCCACCTGCCAGAGCCAGGGGCTCAAGCCCCCACTCTGGAGAAACAGCAGCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(13.5=50.0)
A:
NA
C2:
PF087426=C8=WD(100=72.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains