HsaINT0185321 @ hg19
Intron Retention
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:11642]
Coordinates
chr10:31803531-31810864:+
Coord C1 exon
chr10:31803531-31803636
Coord A exon
chr10:31803637-31809053
Coord C2 exon
chr10:31809054-31810864
Length
5417 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
3' ss Seq
TTGTTTGTTTGTTTGTTTAGGAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
AGACATGTGACGCAGTCTGGGTGTAATCGTAAATTCAAATGCACTGAGTGTGGAAAAGCTTTCAAATACAAACATCACCTAAAAGAGCACTTAAGAATTCACAGTG
Seq A exon
GTAAATATTTTTTTTCTTTCTATACCCTGAATATCATAGCATATGTGGTAATAAATAAATATCATAACATGTAATCTACGTACATGATCAGAAACTCCTTGCATTTCTTTTGGCATACACTAATTGGGAGAAATTTTATGTTTATTTTATGTTTTATTAGAGTCTTAACCTTTGACTAAAGTATATCAAATTAATATAGTATGACATACTCCAGATTTCCTAATCAGAAGATAATATAGCATGTTTTAGTAAGTACAACCTGAAAACATATTAGCTTTCTGATGAATGTAAATGTCATTGCCTCCTTTGCACAATTAGCAGGGGAATGGAAAAGAGTATAGAGATACGATTTGCACAAGAGAATAGGGAAGTGAAGACATCCTTTATTTGAGAAAAGTTGAAATGGAACTCAAGATTAGAAAATATTGGAGAGCTGATATAGAGGCAATGAGAGGGAGTGAAAGGATTACAGCATTAATGAGAATCTGAAAGAAAAATGTGCTCACCCACCATCTTCACCTGTCTATTCCATGTCATTCTGTAAATTATTACTTACAAGGTTAATACTATTATGCGATGAAAGTGTTGTGTCTATTTTAGGAACTCAGAGTAAACAGAGAGCTATATTTGCATTTCTTTGGAGACACTACTTGAACAAAAGCGCAAAAGGAAAACTTGCTGGTATCCCACAATGCCCTATGAAATCTGTTCATCTCCTGATAAATTTTGATATGTTATTTTAGATTTAAATCATTTTAATGAAAAAATTATTAACCATGAATGGGAAATTATGGGTTTTCACACATTGCTTATTTTGTGAAAATTATGTATTGACATTTACATTTTACAAACATCTTCCTACAAAAAAAGTATAGTTGGATAGCTTTGTGAAGCATAGTTGATGATATTTATGTTTTATTTTGGAACTGCATTTCTAAAAGTTTTACTGTATTGCTCATTAAGGCTAACCCTCAATGTTAAACGTGCTGAAGTTACCACTTGAAAATGCTCAAACCAAGATCCTTACCAAAACATTTATTTTCACACATTGATTATTGTTTCTAAAAAGTAGAGGTTGTCTTTTGCAGCCTGCCACAATATTCTGTTTCTTAGCTTCTATGCTATTGAACAATTTTTATCAATAATAATATATTTTAACAACCTACCTTCTTACCAGAGATGATTTAAAGTTGTTAATAAAGATATAGCTAATTCAAGAGGGATTTTTAAATGTTGAAATCAGGGCAGAGGAAGGAAAATAAAGCTAACAGTAAGATTCATGTATATAATGAGTCATATTCATTTTGTCATATTGCAGTCATGGAAGATTTATCAGATCTATAAATAATACAAAGTTGGAAAGTATAAATCAGAACAAGGATTGAAATACTGGTCTAGAAATAAGAAGTTGAAAGTTAAGCATTGGTATTTAAAAATCAGTCTCAATCAAGTAGTAAATTTGAATGGCCCAGAGCTTAATATGAGCTGACTGTATGCTGATACTGCTCAAAAGCTAATGCAAATTTAGGCCAGATCATGGAACACAAAGCTCCCACTGTACTCTGCACTGTCCACTCATTATGTATGTACTTATTTCTGTCTTGTTTTTAAAACATCTAATGTGAGGCTTGTATACCTTTAACATAGCAAGTAATTTTAATTTAAAAATATGTAGGAAAAATTAAGAAACACTAACATGGAGTAAATTGTTGGGGGGACAAAATGAATGCTGTGAAATGCCATACATATGCTGGAAGTGGACCACAAATTAAGCTCTAAGGTTTAGGAAGAAAATGACAATCAGTAACCAAGACCCAGGGTGTCTGTAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGTTGCTAGAAAAAGGACTATTCTTCCTTCCTGATACCAAGTCCATAGAAAACGTTATTCCTTGGAACAACATAAAGAGAAAAGAACAAAACAGAAGTTATATAATCCTCAGAAATATCCTTAAAATAACACAGCAGAGAATTTGATAGGGTTTCTTTTTTAAATCAGATTATTCAATAGAAGCCAGTCATAGTTCACCAAAGTGCTATTTAGGAAAAGCATTGCTCCAGGGTGGCCACGTAGATACAGTTTAAGTACACAGCTCTCTGATGGTCTGGTTGATTCCAAGAGAAGATTTTTGAGCAAAGGCTACCCAAAGTGACATCTCAGGACTGGTACCAGTCTGCAAACCCTGTGTTACTCATTCTTGAGATAAGTACAGAAATTGAGAGTAAGCATTTAGCATTTATTATACCAAGACTTTGTGACATTTTACTATATTTTATAAAATATTGGTCCACAGTAGATTGGAAACTTAAAAAAGAACCAAACAAAGCCAACTGGTCATTCACCACAAATAGTTTGAAAAGCTCTGCCTAGGGTATCTAATAATGGAAGAGCTGAATATCTTTTAGGAAACCTCCATAACTTTCTTTTCACATGACTTTTGAAAAGATGTTGAGAATCAGGATCCAAAATTATACTCTCTAAAATTACCTATATTGTTGCTAAATACTGGTACCCAAAAAATTTTGATCATGACCCTATGCAGAACCGTGTGTGTTAATAATTAGTTGATTCTACCTGTAGGAATTGAGCTATCATGAGGAAAAGGCTACCAGACCTCCACTCAGATTAGAGACAAAAGAACACCTGCATATGGCTGTGGTCCACCCCCAAAAATAATTTTCCATGGTCTTAGTAATTTTTGCCTGGAAAATTTTTGTATCAGATGCAGCCAAACACCCACCTTAGCCATTAAAAAAAAAAAAAAGTCAGTATACATAGTATACCGAACTTTGAGTAGTGAAACTTCCTGATGTAACCTTCAGGCTAAAATACTTGTAAACCCTAACCTCCATAGATAAATTAGTGATATGCCTAACTAATAAACTGTAAAGCTATGAAGCTAGAAACAAGGAGTTTTAAATTAACAAATATAGTGACTTTGGCTTTAGAATAATTGTTGTGTAAACTTTCTTTCTGGCAATGATAAAATATCAAGATAATTTTTAACAATAATAATGATAACTAGCACTTATTGGATCCTTAGCTATGTATAGCCACATGTTAGTTATTTGTATGCATTAATTCATATAGTCCTCAGGATAACCCTATGGAGTAGGTTTTATTATTTTCTACTTTTTACTGATGAGAAAATTGAGGCTCAGAGGGCTTAATTAACTTGTCCAAGGTCACTCAGGTAGTACATGGCAAAGCTAGGGCTGTGATGTAGTCATCCTGACCCAAAGTCATTCCCTTACGTACCATTTCTGTCCCCCTGTTTTAAAAAATAGTCTGTATTTATAGATGTTTATCTTTCTAGCGTCTCTAGAAGGAAAATAAGCATGTAGTTCATGTAAAAATGTTATCAAGTAATTAAAAGTGTTAAAATAGAGATGTACTAGAGTATATTCCTTGTTTTACCCCCACTGGAAACTTTTGTCTGTTGTATTTTGAGAATTGAATCCTATTCCAGGCATCGCATTGGAAAAATATTGATAAATTGGAGAATCCCCAGAGGTGGGTTAACAAGCAGGTAAGGGTTCTAAAACCCACATCCTGTGCAGAATGTTTGAAGGACCTAGGTATATTTAACCTATATAAGAGAAGTTTAAGAATACATATAGCAGCTCTTGATCCATTTGAAGGTTTGACTTGAGAAGAAAAGTTACACTTGTTCTGTGTGGCATCAGGACAAACTAGGATAGGGAAATAGGCATCATAGCTATTTTTTTGGCTCAAACTCAGCCTGTCTCTTAGTAGAATTGCCTTTTTAAAAAGTGACTAGCATTTGTTGAGAGCATACTAAGAGTTTTGCTATATAATCTCATATGACCCCTATAACAGTCCAATGAGAATGTATCTGCATTTGCACATTGAAAAACTAAGGCTTGGACAGGTTAAGAAAATACTATGTGATGGAGCCAGGATTTGAACCCAAATCCATGGACCTCAACAGAACCAGACAGGACCATCTTGTGCAGGGCTGTCCAGCAGGTCCTAACTCCCCTTTTATTAAAGAAGCTCAAGCAGAGATTAGCTGGTGTCAAGAATGATATGAAATGAACTCTTCATTGAAAAGGAGGCTGTACTACAAGGGTTTCTTAAATCTCTTCCAATTCTTATATATGATTCTTCAAATAATCATATTTATTAGAAAATATAACTCACATGTTTAAACTATAGCATTGAAGTTACTATTAAGCAATTTTTAGTAGGGCTTAAATTGATTCCTCACTGCTTTCATTTTAATTCTTAAAAAGAGCAGGAGATGGAGAGTTTTATTTTGATACTAAGTAGACAAATCAGTGTCATCACATCTCATCATTCAACAATTAGCCATTCACTCATCCAAAAAAGGTTTAATGAGCATCTTTGCAACCTGTACTTTGATGGGTGCAAGGGATAAATGGCAAACAAGCCTCAGAGGCTCCTGCCTTACTGAAGCTTATAGTCTGTAACCTTTAAATTATAAATTAGTGAACTATAACTTAAAACTCAAAGGAAACATTAGGTTTGTAGGAAAATATTCCATTTAGCTCGGTGCTTTCAAAATTTTCTACCAAAGTATCCCTAACAGCCAAGGAGAATAAATGCCTTTTACCCCACAGAGTCTAGGGAAGCAGCTTGAGGGAAGCCTCTGCAAGCCAAAGGCTACTTTGACAGTGCGTGGCTTTTCCTAGCAAGTCACACAAATGTGTTTTTCTCTGTTTTAATATAAAAATAATGTTTTATCATATCCACTGTCACTAAAATTGAAACTCCAAGGTGCTTTGATACCCACTACAGTGTTTATCCTGGGAGTATATACATTTCAGTTTAATAAGCCAATGCTTATAGAATATCTTATATAAGTTTTCCTCCCATTAGGGAAAAACTATTTTCAAGAAAGCCCTATGGGTACAGGAATTATTATTAATCAAAGATAGATATTCATACTTGTTAAGTCATATGGGACATTTTACTTATTTTTCTTTTCTTTAATATTTCTCCTACAGATGGTTGAGTAGAGTAAAATATAGAAAATTATATAGGTCGGTGAAATGGGATAAGAAAAAACATACTTGAAAGAGTAGAATGTAATTACTTTTGATACTTGAGAATTATTTGAAGTTATAAAGATTGGTGGAAATATTATACACATATGCTGAGAAGATTCCATGATTGGTTAGCAGAACATGTACCTCAGACTTAGTTACTAGCGTTCATCACATCTATGTAGGTTTTGAAGCTAAAAAGTTTATTCTAAATACAGTTCTGTCACAAGCATGCATGGCAGTCTTCTTTTTAAAATTGATACCGCTTGTTTTAGGGAAATGAGGATACATAAAAATTTATATGTAATAATTCAGTGAATATAATTTGTTTGTTTGTTTGTTTAG
Seq C2 exon
GAGAGAAGCCATATGAATGCCCAAACTGCAAGAAACGCTTTTCCCATTCTGGCTCCTATAGCTCACACATAAGCAGTAAGAAATGTATCAGCTTGATACCTGTGAATGGGCGACCAAGAACAGGACTCAAGACATCTCAGTGTTCTTCACCGTCTCTTTCAGCATCACCAGGCAGTCCCACACGACCACAGATACGGCAAAAGATAGAGAATAAACCCCTTCAAGAACAACTTTCTGTTAACCAAATTAAAACTGAACCTGTGGATTATGAATTCAAACCCATAGTGGTTGCTTCAGGAATCAACTGTTCAACCCCTTTACAAAATGGGGTTTTCACTGGTGGTGGCCCATTACAGGCAACCAGTTCTCCTCAGGGCATGGTGCAAGCTGTTGTTCTGCCAACAGTTGGTTTGGTGTCTCCCATAAGTATCAATTTAAGTGATATTCAGAATGTACTTAAAGTGGCGGTAGATGGTAATGTAATAAGGCAAGTGTTGGAGAATAATCAAGCCAATCTTGCATCCAAAGAACAAGAAACAATCAATGCTTCACCCATACAACAAGGTGGCCATTCTGTTATTTCAGCCATCAGTCTTCCTTTGGTTGATCAAGATGGAACAACCAAAATTATCATCAACTACAGTCTTGAGCAGCCTAGCCAACTTCAAGTTGTTCCTCAAAATTTAAAAAAAGAAAATCCAGTCGCTACAAACAGTTGTAAAAGTGAAAAGTTACCAGAAGATCTTACTGTTAAGTCTGAGAAGGACAAAAGCTTTGAAGGGGGGGTGAATGATAGCACTTGTCTTCTGTGTGATGATTGTCCAGGAGATATTAATGCACTTCCAGAATTAAAGCACTATGACCTAAAGCAGCCTACTCAGCCTCCTCCACTCCCTGCAGCAGAAGCTGAGAAGCCTGAGTCCTCTGTTTCATCAGCTACTGGAGATGGCAATTTGTCTCCTAGTCAGCCACCTTTAAAGAACCTCTTGTCTCTCCTAAAAGCATATTATGCTTTGAATGCACAACCAAGTGCAGAAGAGCTCTCAAAAATTGCTGATTCAGTAAACCTACCACTGGATGTAGTAAAAAAGTGGTTTGAAAAGATGCAAGCTGGACAGATTTCAGTGCAGTCTTCTGAACCATCTTCTCCTGAACCAGGCAAAGTAAATATCCCTGCCAAGAACAATGATCAGCCTCAATCTGCAAATGCAAATGAACCCCAGGACAGCACAGTAAATCTACAAAGTCCTTTGAAGATGACTAACTCCCCAGTTTTACCAGTGGGATCAACCACCAATGGTTCCAGAAGTAGTACACCATCCCCATCACCTCTAAACCTTTCCTCATCCAGAAATACACAGGGTTACTTGTACACAGCTGAGGGTGCACAAGAAGAGCCACAAGTAGAACCTCTTGATCTTTCACTACCAAAGCAACAGGGAGAATTATTAGAAAGGTCAACTATCACTAGTGTTTACCAGAACAGTGTTTATTCTGTCCAGGAAGAACCCTTGAACTTGTCTTGCGCAAAAAAGGAGCCACAAAAGGACAGTTGTGTTACAGACTCAGAACCAGTTGTAAATGTAATCCCACCAAGTGCCAACCCCATAAATATCGCTATACCTACAGTCACTGCCCAGTTACCCACAATCGTGGCCATTGCTGACCAGAACAGTGTTCCATGCTTAAGAGCGCTAGCTGCCAATAAGCAAACGATTCTGATTCCCCAGGTGGCATACACCTACTCAACTACGGTCAGCCCTGCAGTCCAAGAACCACCCTTGAAAGTGATCCAGCCAAATGGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516-ZEB1:NM_030751:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.504
Domain overlap (PFAM):
C1:
PF061076=DUF951=PD(75.0=85.7),PF0009621=zf-C2H2=WD(100=82.9)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=2.5),PF0004624=Homeobox=WD(100=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000319248, ENSP00000391612, ENSP00000405958, ENSP00000415961, ENSP00000444282, ENSP00000444891, ENSP00000452612, ENSP00000452703, ENSP00000452784, ENSP00000452787, ENSP00000452868, ENSP00000453258, ENSP00000453559, ENSP00000453568, ENSP00000453674, ENSP00000453823, ENSP00000453874, ENSP00000453970
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)