RnoINT0167564 @ rn6
Intron Retention
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54663592-54668786:-
Coord C1 exon
chr17:54668681-54668786
Coord A exon
chr17:54664761-54668680
Coord C2 exon
chr17:54663592-54664760
Length
3920 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GCTGTTTTGTTGTTCTTTAGGAG
3' ss Score
9.43
Exon sequences
Seq C1 exon
AGACATGTGACACAGTCTGGAGGTAACCGTAAGTTCAAGTGCACCGAGTGTGGGAAAGCGTTCAAGTACAAACACCATCTGAAGGAGCACTTACGGATCCACAGTG
Seq A exon
GTGAGTGCACACTTCCTCCTGCGCCCTGGGCCACCAGGACATCTCTGCTAAGGAGAAATCTGTCATCGCAAGTCCCACTGTGTCAGAAGTTCCTGATGCTTCTCATTTAAATGATACTTTATTAGTGTCTAATCTCTAAAGTACATAATAAAGCAACTCCATTTCTCTATCCGAATAGATAGCTTTACATGAGAAAAGTAAAAGAAAGAAAAGGAAATTAACAAACTCATGGTGTGGACCCAGATAGCTAAGGCAGCACAAGGACACAATTGTAGCATAAATGAGAATTCAAAAAAAAAGAAAAAGGTGCATTCTCCAGAACTGTCACCTTCCTTTTCACACCCATTTCAAATTGCCTTGTAGATTTAATGAAAAAAAAAAAACTTACAATGAAAATTTAGTAATCACACATCACACTGAAAAGTCTATTCTTTTGATTAAAATCTGATACATTCTTTGTGATTTAAGTAATTTTAGTGACAAAGCTGTCAGCCAAGGAGTTGAGAACTTGCTGTTTGCTGTTGTTGACCTCTGAGCTCCTAATAGGTAAAGCACTGGCTTTTCCCAGCAGCTGTTGGGGTTTGTAAGTGCTAGTCACTCAGTGTCATTTGGAACTGCATTTCTGGAAGTTTTACCATCTCCGTTATTGAATTAACCCTCCATGATTAATATGGTTCCTTGAAAATGCTCAAACCAGGATCCTTAAAGACAACTTTTATCTACTTTCATGTATTGATTTACTTATGTTTCTGGGAAGTATATTTCATCTCGCAGCCCACACAGTACACTGTTCCATAGGCCCCTGTCAGGAAGTGAGTTTACATGACGAAAAAGACAGTGTGTTGACACTTACTATTACTACCACTACTGAACAATGATTGCTGCTCCAATTAGACCTCTTCATATCAGAAACTATTTGAAATGTCAGCTAAAAAGAGGGTTTGTGATTGTCAAAATTAGAGAACAAAATAAGAAAAACTTGAATATGATTTATGTTCTAGTTTTGTCCCAGCATTTACCAGATCTCCTAACAGTACAAAGATCAAATACTGGTCTCCAAACCAAACACTGACATTTAATGGAGACATTCTGCTTGGTGATCAAAAGCCATCTCAGTCAGGAAGTGAGTTTACATGACGAAAAGACAGTGTGTTGACACTTACTACCACATACCAGTTGAAGCCAGTTCAGTGGACACAAACTCTCCACTCAGGAATTTGTGTGTCTTCAACCTCTCTAATATGAGGCATCAATACATTTAGCACAGCAAGTAATACAAATTCAAAATACTGAATAAGCCTGGGACTACCCTTCCTAATAGCTTGTTCCATGGAAAATGCTCCTTAAAGCATCATAAAGAGCAAATTATGGGAGCTGAAGAGATGGCTCAGAGGTTAGGAACACTAGCTGCTCTCTCAAGCAGACCCAGGTTCAATTCCCAACACCCATATGCAGCCGACAACTGTCTGGAACTCCTTTCCAGGGTGTCCAACACCCACACAGGCATACATGTAAGCAAAACACCAGTATGCATAAAAGTTAATAACTTTAAATTTTTTAAAGAACAAAATATGACTTCTTATATCATGAGAATTATTTTAAACACTATAAGGAAACTTGTGTTTCAATCAGATTCTTCAGTAGAGGCTACCGATATTTTCCCCAGTTGTGATTTAGAAACTGTGTCTCCCCAGGGCAGCCAGTTGAGTGCAGCCCAAGTGTGCAGCTATTTGAGAGTCTGGTTTATGCCAAGGGAAGAGTTTCAGACAGGGCTTCTCCGAGCACCAGCCAAAGCCTGGCTCCACACTGCCAGCCTCCTGCCCTGATCACTCCAAGAGATGATACAGAAGTTGGGACTAAGTATCAGGCTGTTGCTGTGACATTTTTTTATTAAAAAAATGTTCTCTGTGTGTGTGGCACACGTTTGCACGTATGTATGTACAGGCATGTGTGTGCCACAGTACACCTGTGGAGGTCAGAGCAGAGCCTGAGTTCGCTGGAGCTCTCCTTCCACCCCATGTGTCCCCAGCTCAGTGGAGACCTTTATCCCCTGAGTCATCTCTTTGGACCCATTTTCTTTAGAGTTTACAGAATTTCAGATGAGATTGACTTGAAACTTAAAAATGAAAAAACATCCTCAGCTTCTTTCTTTGGGTGCCTTGAAAAGCGCTTGCTCTCCATGGTGCTCAGGTACAAGTGACCTGTACACTCTGCAGAGAGCATCTCTAGTGATTTTTGTCTTGGTGTATTTTCTTTAGCTTTTACATTTTGTTGAGGATCAGAGTCCCAAATATCCTAGATTGTCACTCTGTTCTCATCATCATGAAGCTTTAGCTGTGAGCTCTGGGCAGACCCATGTATGTTAGTATGTTAATGCTGATATGCTGTGTTGGGATCTGAGCTATGCTCTGGACGCTCCCCTGGCTCCTCTCAGGTAGGACAAAAGTGTGCTTGCCTAGGGTACAAAGTACTGCCATATTCATTCTGTAAACTCAGCACTGTGGCCTGGAAATTCCCGAGTACGATCTGACCACCAACCTCCTACCTCCACCCTTGAAAACTCTTAGTTTACCTCTGGCTTAGTAGTGCCACTTTCTGAGAGAAATCCAGGCTAAACTGGTACCATAACCAAAGTAAAAGGGCATGCCCTGAAGTTAGAAACCAGGAGTTCTCCAACACAGTAGATCTGGCTTAGAATAATCTATTATGTATATATGTTTCTCACAGTGATGGAGTTACCACAGTGATTCTGAACAGTAAGACATGATAAGTAGAGTGTGCTGACATTACTTCTGTAGGTCTCAACCCCATAAAGTAGACTGTATCACACACCTTTCTGACAAGGACTCATAGGCTCACAATGCAAATTCACATCTCCAAAGCCACTTGGCTAGTTCATGCCATACCTGAGCTCTGTCAGCAGCACCAACTCCAAGCCATGGCCTGCCTTCCTCTCTGCAGGAAAAGGAAAATTCTGTGACTCATTAAAGCTAAAGCTGCTATCCAGTCATTGACAGTGATGAACTGAGCTGAGGTAGAACAGACTTGTTAAACAGAGCTGCACTGAACTGGCACACACCCATTACCTCATGACCACTTCTATCTGATGGTACTGGGCATTGAATTCTATTCCAAACAGTCCATCTGCAATTCCTGAGGACAAGGGGAGCATGCAGTGGTGGGGTAACAAACAGGGTCCTGAAACCCTGTCCTGAGAAAGCTCAGGAAGGACCCTGATCGTCTCCGTCTGCAGGGAAGCTTGCAGTGATTCTGGAGGTCTGCTTGTAATAACAGTTAGGCTTGCTGGTGCATATCAGAGGGAGAGCAGGAAAAGGCCTGGGCGTGAGCAGCAGCTCCTCTGGCTCAGTCCTCAGCCTGTCTATTGGTAAAATGCTTTTTGAAGAAAACGCTGCAGTTTGATTGATGAAATGGGATAAGGAAAATTTACTTAAGAGTAGACTAGTTCCTTTGATATTTGAGCAATATTGGAAGTCCCGGTGCGTAGTGGAATGCTATACATGTGGTAAGAAGGGTTCCTGTTGGACTCACACACCATCCAGAGCACAGGTCTTCATATGTTCTCAACATTTTTGTAGCTTCGAAACTCTTGGGCATACACCCAAAAGATGCCCCAACATACAACAAAGACACGTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCTTCGAAACTTAAAATGATAACTATATGTAAAATAGTATCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGAGTTCGGTCCCCAGCTCCGGAAAAAAAAAATAGTATCATGGGCATAGAGGAGTCTTGCTTCTTTTTAATGACTGTTTCTTACGTAGGCCCATGTGAAATACACTGATTCATTGGTGCTGTTTTGTTGTTCTTTAG
Seq C2 exon
GAGAGAAGCCATATGAATGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGCTCTTATAGCTCACACATAAGCAGTAAGAAGTGTATTAGCTTGATGCCTGTGAATGGTAGGCCCAGATCAGGACTCAAGACATCTCAGTGTTCCTCGCCATCTCTTTCAACATCACCAGGCAGTCCCACACGCCCACAGATACGGCAGAAGATAGAGAATAAACCCCTTCAAGAACCGCTTTCTGTAAACCAAATCAAAACTGAACCTGTGGATTATGAGTTCAAACCCATAGTGGTTGCTTCAGGAATCAACTGTTCAACCCCTTTACAAAATGGGGTTTTTAGCGGTGGTGGCCAATTGCAGGCAACCAGTTCTCCTCAGGGTGTGGTGCAAGCTGTTGTTCTGCCAACAGTTGGTTTGGTATCTCCCATAAGTATCAACTTAAGTGACATTCAGAATGTACTTAAAGTGGCTGTAGATGGTAACATAATACGACAGGTTTTGGAGAATAATCAAGCCAGTCTTGCATCCAAAGAGCAAGAAGCCGTGAGTGCTTCATCCATCCAGCAGGGCGGCCATTCTGTCATTTCTGCCATCAGTCTTCCTTTAGTTGATCAGGATGGCACAACCAAAATCATCATCAACTACAGTCTTGAGCAGCCCGGCCAACTTCAGGTTGTTCCCCAGAATCTAAAGAAAGAAAACCCAGCCCCTCCAAAGAGCTGCAAAAGTGAGAAGTCACCAGAAGATCTTACTGTCAAGTCAGAGAAGGACAAAAGCTTTGATGGGGCTGCGGATGAGAGCACTTGCCTTTTGTGTGAGGACTGCCCAGGAGACCTCAATGCACTTCCAGAACTAAAGCACTATGACCCAGAGCACCCTGCTCAACCTCCACCCCCTGCCCCAGCCACCGAGAAGCCAGAGTCCTCTGCTTCATCAGCCGGCAATGGAGATTTGTCTCCCAGTCAGCCACCTTTAAAGAACCTTCTGTCGCTCTTAAAAGCCTACTATGCTCTGAATGCACAGCCAAGCACAGAAGAGCTCACCAAGATTGCCGATTCTGTGAACCTGCCGCTGGATGTAGTTAAAAAGTGGTTTGAAAAGATGCAAGCTGGACAGATTCCCGGGCAGTCTCTTGAACCACCTTCTCCAGGACCGGGGTCAGGAAACATCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863:ENSRNOT00000024336:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=NA C2=0.450
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=27.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=3.8),PF0004624=Homeobox=WD(100=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]