HsaINT0185492 @ hg19
Intron Retention
Gene
ENSG00000062370 | ZFP112
Description
zinc finger protein 112 homolog (mouse) [Source:HGNC Symbol;Acc:13021]
Coordinates
chr19:44844568-44847454:-
Coord C1 exon
chr19:44847406-44847454
Coord A exon
chr19:44844695-44847405
Coord C2 exon
chr19:44844568-44844694
Length
2711 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCATGTGTTTGGCATTGTAGGAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
GTCTCTGCCTTTCTCTAGAAAAAGAAAGAGAAAAATGACCAAATTCCAG
Seq A exon
GTGAGCTGGTTTTCATTTATGCCGTTTTACATGTGACCTCATTTTGCAGTGAGTGGACATATCTTTTTCCCCCTTCTTTGCCAAGGGTAAAGAATGACAACAGGCATTTAGTATCATTTATGTATCAGGCTCTTGCTTTTTGTTTTTGTCCTTTTCTAAAATTTCCTTTTAGTTGTAAATGTGTTTTATTATTTATTTCATAAATAATAGTACAAAGAAGAATAGAAATTTTAAAATCCTACACCTTATTACCCTGCTTACAAATCTGTTTTTGTCCATGGTCATTTTTTTAAATATAACTGTTCTTGCATTAATACATAACAATTTTGAATTTTTATCCGCTTAATTTTTAGCAGTTAATTTTTATCATCTAATATTATTGACGTAAACTGTTGTTATCCCTCTCCCCCTTTTCTTTTTCTTTTTCTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAATGCAGTGGCATGATCTCGGCTCACTGCACCCTCCACCTCCTGGATTCCAGCAATTCTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCCACCACACCGAGCTATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTACGTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCCTTTTCTTTAAATTATTTCCAACTCACAAGCTTTTACGTTCCTGAGGATTCTTGCAGTTTTACATTGCAGTATCAGTTTTCCTACAAATAATCTTGACTCAAAAACCAGTGTGAGAGAATTTTGATATTATTTGTCCATAATGTTCTAGAGACTCAAAACTAAAAATATTTTCTCCTAAGTGATGTCTCAGGTGGAATACATAAAATATGATTTTGTCTAACAAGATTATATTGAAGCTAAGGTTGGGGGAAAAATAGATGTTTTTGTACAAGAAGAGCTAGATTCTTATATAAGAAGAGCTAGATTCTTCTCAGTACCTATAGCTATGTGTTTATCTATATATGTTTGTATGTCTGTGTGTGTTTCATTATTCATGTATTAATTTTATTAGAGTAATACAGGTACTTAGTTTAAAGTTTTTAGTCATACCATAGGATATATAGGCACTTTGCATCTGTCACACTATTCATGGCCCCAGATGACTGTTGGAGGGGAACTGTAGAGTCGTTTGCACTGTTAAGAGGTTCATGTTCATACAGGAAGATAAGCATTGGGCCAACTCTAAAGCCTTTGCTTTCTGGGCCAAGAGTTTCAGGCATATCACTTGCGTGGAAAGACTTACAAAAAAGCAAAGCAAACCAAAGCAGAGTTCTGCATTCAGAGCTGAAGCTGTTATGCTCAGAACTGCAGCCAGAAGAAATATGGGACTGAACAGTTGTTCATTTAAAAATTTAAAATTACCCTACAGCAAAAAGTTACAAGACAGCAAAGTGGAATGAAAAATATTTACAATGTCCATGGAAGAAAAGACCTCGGTGTCCTCCAAATGAATTATTATTACAAAACAAGAAATCGAGATGAACAGCAAATGTGTGTAAAGAGAATGAACTTTATTACCAATAAGTTTGTGAGAATGTTTTTAATAAATGATTTTTACTTCCCAAATTTACTTGTGAGATTATGAAAGATTTTTTTAAAAAGCTTTCATATCCAGTGTTGACTATGATTTATACTTTCTTGGAAGAAGGCTAAGATGGAAGGCGAAAGTCTGTTTTGGGAAAACACCTGCCATTATGATTTCAGAACTTTAAAGGTCATTATTCTTCAGCATTGCCATTGTTACTTTTTGGTATTTATTTTGAGGAGATAATCAACAGAATTCCAGAGGTTAACGTCAATGCAAAAGATTGTTTTTGCAACATTGTTCGTATAGGTAACCTCAAACTAAGTGTGCATTAGTTGGATCAAATTATTATATTCTAGACCATTAGTTCTCTGAATTACTTTGCAGCCCAGAAATGGGATAGAAGATATAATGAAAATATTAATAATGTAGCTAACATTTGTTGGGTACTTACTGTGTGCCAGGTGCTGTTTTCCATGCTTTACATGTGGTCACTCATTTTATTACTAGGACTGTATGGTATAAGTTTCACCATACAAATGAGAAGATAGGAAACTTGTCCAAGATCATAGAGCTAGCATTGGGCAGAGCGCCCAGATCCAGACACAGGCAGTCAGGCTCCAGAGCTGTGCCCATCACTGCAGCAGTCTCCAGATGAGCACAGAGGATGAGCTACATATTTGAGCAGTAAGGATGACTGATACCCTGTAAATTTGACAAATTAAATAAGTGATGTGTGTGTGTGTAAATGAGGAGAAACAGGTAGCATCAGTCACTGTTAGAACTAAAGCTTTTGTGGAGCAAATGACATTATTATTACAATTTAAAATATTGGTAACCTAGGGTGCAACAGAGTTCCAGAGGCTTACTTATAAGTGCTAACAAAAGGAAGTAATTTCAAAGTGCAAGGATTTCTTTTCTTGCAGCCCTTTTGGTGAATGGTATTAGCATTACAGAAGGTAAACAGAAGAGAACTATGTAAATGTGACTCAAGTTGCCCAGACTCCAGAACAGCTTCCAGTCCTTTACACCTTCTCAGCACTGCCCTTCTTCTGTAAACTTAGTGTGCATGTGTTTGGCATTGTAG
Seq C2 exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-ZFP112:NM_001083335:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)