HsaEX0072649 @ hg19
Exon Skipping
Gene
ENSG00000062370 | ZFP112
Description
zinc finger protein 112 homolog (mouse) [Source:HGNC Symbol;Acc:13021]
Coordinates
chr19:44844568-44860826:-
Coord C1 exon
chr19:44860778-44860826
Coord A exon
chr19:44847406-44847454
Coord C2 exon
chr19:44844568-44844694
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTCTGCCTTCTCAGGTC
3' ss Score
11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTTCCGCCCCAGGTACGCTAGGCCGCGGCCTTCGTTCCTCCCAGAAAG
Seq A exon
GTCTCTGCCTTTCTCTAGAAAAAGAAAGAGAAAAATGACCAAATTCCAG
Seq C2 exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCGTTCCTCCCAGAAAG
R:
GGTTCCTGAAGTTCTCCAGCA
Band lengths:
136-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)