HsaEX0072649 @ hg38
Exon Skipping
Gene
ENSG00000062370 | ZNF112
Description
zinc finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12892]
Coordinates
chr19:44340416-44356680:-
Coord C1 exon
chr19:44356626-44356680
Coord A exon
chr19:44343254-44343302
Coord C2 exon
chr19:44340416-44340542
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTCTGCCTTCTCAGGTC
3' ss Score
11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAGCCACTTCCGCCCCAGGTACGCTAGGCCGCGGCCTTCGTTCCTCCCAGAAAG
Seq A exon
GTCTCTGCCTTTCTCTAGAAAAAGAAAGAGAAAAATGACCAAATTCCAG
Seq C2 exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-'2-14,'2-12,3-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCTCTGCCACTTCCTA
R:
TCTCCAGCATCACATCTCGGT
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development