MmuEX0053025 @ mm9
Exon Skipping
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24897343-24907379:+
Coord C1 exon
chr7:24897343-24897455
Coord A exon
chr7:24903354-24903402
Coord C2 exon
chr7:24907253-24907379
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCCTGCCTTCCCAGGTC
3' ss Score
10.68
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGTTCTCCCCGCAACCTTCGGGAATTCTGGGAAGTGTAGTCCTGGCTGCCTATGCGGGAAGAGTCACTTCCGCCCCAGGTGTGTGAGGCCTTGTTCCGTTCCTTTCAGAAAG
Seq A exon
GTCTCCATCATTTCCTAGAAAAAGGGAGGAGAAAATGACCAAATTGCAG
Seq C2 exon
GAGATGGTGACCTTCAGGGATGTGGCTGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCCCAGTGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGTGAGGCCTTGTTC
R:
CTCCAGCATCACCTCTCGGTA
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: