MmuEX0053025 @ mm10
Exon Skipping
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24112324-24122360:+
Coord C1 exon
chr7:24112324-24112436
Coord A exon
chr7:24118335-24118383
Coord C2 exon
chr7:24122234-24122360
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCCTGCCTTCCCAGGTC
3' ss Score
10.68
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGTTCTCCCCGCAACCTTCGGGAATTCTGGGAAGTGTAGTCCTGGCTGCCTATGCGGGAAGAGTCACTTCCGCCCCAGGTGTGTGAGGCCTTGTTCCGTTCCTTTCAGAAAG
Seq A exon
GTCTCCATCATTTCCTAGAAAAAGGGAGGAGAAAATGACCAAATTGCAG
Seq C2 exon
GAGATGGTGACCTTCAGGGATGTGGCTGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGACGCTGCCCAGTGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGTGAGGCCTTGTTC
R:
CTCCAGCATCACCTCTCGGTA
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types