RnoEX0101030 @ rn6
Exon Skipping
Gene
ENSRNOG00000029022 | Zfp112
Description
zinc finger protein 112 [Source:RGD Symbol;Acc:1305757]
Coordinates
chr1:80944103-80953398:+
Coord C1 exon
chr1:80944103-80944331
Coord A exon
chr1:80951092-80951140
Coord C2 exon
chr1:80953272-80953398
Length
49 bp
Sequences
Splice sites
3' ss Seq
ACGCTGTGCTGCCTTCCCAGGTC
3' ss Score
8.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCATACCCGGGAAAATAGGATAACTTCCGCTGCAGGAGGTTGAGAGGCCACCCTATTCCGGTTGGGGGATGTGGGAACTGTAGTTTGTGTAAGAATAACTTTCTCAGCAGGAGATTATGTCCTCCTTTCTCCCTTCGGAAATTCTGGGAAGTGTAGTCCGGGCTGCTAATGAGGGAAGAGTCACTTCCGCCCCAGGTGTGCGAGGCCTTGTCCTGTTCCTTTCAGAAAG
Seq A exon
GTCTCCATCGTTTCCTAGGAAAAAGGAGGAGAAAATGACCAAATTGCAG
Seq C2 exon
GAGATGGTGACCTTCAGGGATGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTACCGAGAGGTGATGCTGGAGAACTTCAGGACGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029022_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTGTCCTGTTCCTTTCA
R:
GAGCAGCGTCCTGAAGTTCTC
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]