HsaINT0185506 @ hg19
Intron Retention
Gene
ENSG00000198939 | ZFP2
Description
zinc finger protein 2 homolog (mouse) [Source:HGNC Symbol;Acc:26138]
Coordinates
chr5:178339585-178340072:+
Coord C1 exon
chr5:178339585-178339720
Coord A exon
chr5:178339721-178339982
Coord C2 exon
chr5:178339983-178340072
Length
262 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATGTCTCTCCTCTTAAGCAGGAA
3' ss Score
7.15
Exon sequences
Seq C1 exon
TTTCAGGAGTCAGTGACCTTCAAGGATGTGTCCATAGATTTCTCTTGGGAAGAGTGGATTCAAGCAGATTCTGCTCAGAGGATGACCGTGTATGGGGAGGTGATGCTGGAGAACTACAGGAACCCGGTCTCACTGG
Seq A exon
GTAAGGACTTCTTGTAACTCAAAACCCACCTCTTGACAATCATAAGGCCTGATCATAAGGCATTGTTTTAGGGTGTTTGCTTGGTGTCCTCTCTTTCAAGGCAGAAGATTGAAATTTTCTGTAGAGAATGGAAAATGGGGAACTTCATAAGCCACACCTTCCTTGTTTCAGAAGCCCTGAAGGAGAAATGATCAGAACTCTGCTAGGATTGGTTTTTAGGCTCAGTTCAGAACCCAAATTTAATGTCTCTCCTCTTAAGCAG
Seq C2 exon
GAAATCACCTTTCCAAACCCAATGGGACTTCCCAGCTGGAACGAGAACTGAGTCTGATGCAAAAAGAACCGCCTGAGGGTGGCTTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198939-ZFP2:NM_030613:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCAGTGACCTTCAAGGA
R:
CTCGAAAGCCACCCTCAGG
Band lengths:
222-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)