BtaINT0164378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2374647-2375158:-
Coord C1 exon
chr7:2375036-2375158
Coord A exon
chr7:2374737-2375035
Coord C2 exon
chr7:2374647-2374736
Length
299 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GTGTTTTTCTTCCTAAGCAGGAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
TTTCAGGATTCAAGGATGTGTCTGCGGACTTCACCTGGGAGGAGCAGATCCATCTAGATTCTCCTCAGAGGAACCTGTATGGGGAAGTGATGCTGAGAAACTATAGGAACCTGGTTTCACTGG
Seq A exon
GTAAGGACTTCTTGTAACTCAAAACCTACCTATTACCATCTTTCCTACCACTGACAGCTTGTATAGCCTCTGGAATTTTTGAATTTGTACTTGAAATCCTGATACTACAGGACATTATTTTAGGGTAGTTCCTTGGTGTCCTCTCAAGGTGAAAGGTCTTTTCTGTAGAGAATGGAAAAATGGGAAATCTCAGAAGCCACATACTTCCAGAAGCCCTGAAAAGGAAGGGATAAGACATGCTGGGAGTGATTTTTATGCTCAGTTCAGAACTCAAATGTAGTGTTTTTCTTCCTAAGCAG
Seq C2 exon
GACATCAGCTTTCCAAACCTAATGTGATTTCTCAGCTGGGTTGAGAACTGAACCTGATGACAAAAGAACATCCTGGGTGCATCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122:ENSBTAT00000009371:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTCAAGGATGTGTCTGCG
R:
GGAGATGCACCCAGGATGTTC
Band lengths:
205-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]