RnoINT0167839 @ rn6
Intron Retention
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36400034-36400471:-
Coord C1 exon
chr10:36400303-36400471
Coord A exon
chr10:36400124-36400302
Coord C2 exon
chr10:36400034-36400123
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
GTCTCTTTCTTCCCAAGCAGGGC
3' ss Score
8.47
Exon sequences
Seq C1 exon
GAATCACTGATATACAAAGATGTGTCTGTGGACTTCACTTGGGAGGAGTGATGCAGCTATGTTCTGCACAGAGGAACCTGTATGGCAGGGTGATGCGGGAGAACTGGAGCACCCTGGTCTCCCTGGGTGAGCAACCCCACCTTCAGCCTTCTGCCTATGGAATTCACAG
Seq A exon
GTTTGACTCAAAAACCCCCTCTCATGGGACATTGTTTAGGATAGTGCCTTAGTGCCTCTCTCTCACGACGGAAAGTCTGTAGAGAACAGAGAAAATGGAGAGGGGGAAATTAGAACAGTCCTGGGGGTATGTGCTGATTGAGCTTAGAACCTAAACTTGGTCTCTTTCTTCCCAAGCAG
Seq C2 exon
GGCATCAACCATCCAAACCAAATGTGATCTCTGACCTGGAACAAGAACTGACTCTGAGAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750:ENSRNOT00000040346:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGTCTGTGGACTTCACT
R:
CCAGAGAGATGCAACCTGGGA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]