MmuINT1035502 @ mm10
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50910436-50910876:-
Coord C1 exon
chr11:50910750-50910876
Coord A exon
chr11:50910526-50910749
Coord C2 exon
chr11:50910436-50910525
Length
224 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
GTCTCTCTCTTCCCAAGCAGGGC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GAGTTACTGACATACAAAGATGTGTCTGAGGACTTCACTTGGGAGGAGTCAATGCAGCTATATTCTGCACAGAGGAACCTGAATGGCAGAGTGATGCTGGAGAACTGTAGCACCCTGGTCTCCCTGG
Seq A exon
GTGAGCACCCCCGCCTTCAGCCATCTGCCATATGGAATACACAGGTTTGACTTGAAAACCCTGCTCTTGTAGGGCATTGTTCAGGATAATGCTTTAGTGCCCGTCTCTCACAGTGGAAAGTCTGTAGATAATGGAGAACATGAGAAGGGGGAAATTAGAACAGTGCAGAGGTTGCGTGCTGACTGAGGTCAGAACCCAAACCTGGTCTCTCTCTTCCCAAGCAG
Seq C2 exon
GGCATCAGCCGTCCAAACCAAATGTGATCTCGGAGCTGGGACAAGAACTGACCCTGAAAAAAGGAGAATTCCCAGGTTGCATCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321:ENSMUST00000109128:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACATACAAAGATGTGTCTGAGG
R:
CCAGAGAGATGCAACCTGGGA
Band lengths:
212-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types