HsaINT0185861 @ hg19
Intron Retention
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677]
Coordinates
chr16:25264267-25266713:-
Coord C1 exon
chr16:25266527-25266713
Coord A exon
chr16:25264359-25266526
Coord C2 exon
chr16:25264267-25264358
Length
2168 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTTTCTTTCTATTCTTACAGCTC
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTCAGCAGTCCCGTGCACCGGGAGAAGCACTCCCCACTTGGAGCAGCGTGGGAGGTGGCAGACTTCCAGCCAGAGCAGGTGGAGACCCAACCCAGGGCGGTGTCTCGGGAGGAACCTGGAAGCCTCCACTCAGGACACCAGGAACAGCTGAACCGAAAGCGAGAACGTCGGCCCTTACCCAAGAATG
Seq A exon
GTAAGAGGGAAGACTCGGAGCACGCCTAGTGCAGAGGCTGGGGCAGATTTCCGCAGTACCCCAACGCTGTGAATGTGCAGTGGAGGGCCTCCTTGATACATATTCAGAATAGGAGAAAGGTTTCATTCACTTCAAGAATTAGGAACATGTGCAATATAAGTGAAAAGGTATCATAAAGATGGAAACTGAGTCTGGGCAACATGGGAAAACCCAGTCTCTACAAAATCGCAAAAAAAAAAAAAATATTAGCCAGGTGTGTTGGCGTGCACCTGTGGTCTCAGCTACTCAGGAGGCTGAGTCAGGAGGATTGCTTGAACCCAGGAGGTTGAGGCTGCAGTAAGCCGTGATCACACCACTGTATTCCAGCCTGGGTGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAGATCCAAACTGGGGAAACTTAGATTGCCTGGGCCAGCTATGAGATCCTGTGGTGGTAAACTCTCCATGGCTGGACACAGTGACTCACGTCGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCTCTTGAAGCCAGGAGTTCAAGACCAGCCTGGGCAAGATAGCGAGACAAACACATTTTCTCTACAAAAAAATAAAATAAGATCTACATTCTACAATCATCATGTGTTTTTCAGTCCTGCCATGTGTATGTGCTCTTGGCTGACTATAAATAAGTCAAAAAGCTGTTTGAAAGGGAACAAGGCATTTGTGTTCAAAGTTTGACTCACAGGCCATCACAGAAGTGGCATACAAGAGAGATAAACAGTTAAGATTTCACAGGGAAGGGACCACTGACATTCATAGCTGCCCTGCACATTAATGACTCAGGTCAAATGCTAGGAAATGAATACCCTGTCCTTCCCAGTCCACAGTGATCTCTCCATCTCCTGAAGTGTGGCTTCATCTCAGTCTTAAAGAGAGGAATGGAAACATCACTAAACCTGCCGTCAGAAGTCTTCTGTTTATATCTTGTCTCTGCCACCTTCTGTCTGTGATCTTGGGCAAATAATATGAAAAGACGCATGAATGCACAGAGGCTAAGAGCTTAGGCTTTAGAGACAGACAGACCTAGATTCAAAACCTAGCTCTGCCATTTTTTTATCTATGTGGCCTTGGTCAGGATACTTAACTTCTCAAGCTTTCCATTCTCTCATCTTTATTTTATTTTATTTTATTTTATTTTTTCTTTGAGGTGGAGTCTTGTTCCAGGTTAGCGTGCAGTGGCACGATCTCAGCTCACAGCAACCTCCGCCTCCCAGGTTCCAGCAATTCTCGTGCCTCAGTCTCTCGAGTAGCTGGGATTACAGGCGTGTGCCATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTTGAACTCCTCACGTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGTCCTCTCATCTTTAAGAGGGAAATAGCAAGGCTATTTGTGCAGATTAAATGCGGCAGCATGAAGGAGCCAGTGCATAATAGTGCTCAATAAATGCTAGTTTCCTTTCCCCCAGAATGGCACAATTATTTTTAAACCTCAAGTCTGTCTGATTTACCCAGCCCTTCACTGAGAGGCAAGATTCAGTACTACTATACTGTTTTATGCCTCCCCAAATTTATATTATGATGGAATGCATTGCAAATGTCCATGATTGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGGAGAAAAGGGAAGGGAGGGGGAAAGGAAGGCTGGGGAAGGGAAAGGGGGTAGGGAAGGAGGGAAGGTACCACAGCCATAGTCTCACACTGAGACATGAGCGGGACCTGAGCATTGGCATTGGCAGTGCCCTTTCAATCAGATGTGTGCTCTCCAGTTCCCACAGTCCTTACCTGGTCCCCTTCATCCTGTATTTACTTGCTTACCCCCGGAAAGCATTTGAGGCTGTGATCCCAGCTTTAGGGTACTGTGTTTTTGGGGATTGTTCTGAACTCACAGATAAAATGGTGAATTTATATTTGTTGGTGTTTCAATACATACTCATCTCTTAAAAAGAGAGACAGCATGAATTAAAGGGTCAAAGCCCAGATTACTAATCGTTTCTTTCTATTCTTACAG
Seq C2 exon
CTCGGCCTTCTCCCTGGGTTCCTGCCCTTGCTGATGAATGGAATACCCTAGATCAGGAAGTGACAACCACACGGCTTCCTGCTGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592-ZKSCAN2:NM_001012981:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.935
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)