HsaINT0185861 @ hg38
Intron Retention
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:HGNC:25677]
Coordinates
chr16:25252946-25255392:-
Coord C1 exon
chr16:25255206-25255392
Coord A exon
chr16:25253038-25255205
Coord C2 exon
chr16:25252946-25253037
Length
2168 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTTTCTTTCTATTCTTACAGCTC
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTCAGCAGTCCCGTGCACCGGGAGAAGCACTCCCCACTTGGAGCAGCGTGGGAGGTGGCAGACTTCCAGCCAGAGCAGGTGGAGACCCAACCCAGGGCGGTGTCTCGGGAGGAACCTGGAAGCCTCCACTCAGGACACCAGGAACAGCTGAACCGAAAGCGAGAACGTCGGCCCTTACCCAAGAATG
Seq A exon
GTAAGAGGGAAGACTCGGAGCACGCCTAGTGCAGAGGCTGGGGCAGATTTCCGCAGTACCCCAACGCTGTGAATGTGCAGTGGAGGGCCTCCTTGATACATATTCAGAATAGGAGAAAGGTTTCATTCACTTCAAGAATTAGGAACATGTGCAATATAAGTGAAAAGGTATCATAAAGATGGAAACTGAGTCTGGGCAACATGGGAAAACCCAGTCTCTACAAAATCGCAAAAAAAAAAAAAATATTAGCCAGGTGTGTTGGCGTGCACCTGTGGTCTCAGCTACTCAGGAGGCTGAGTCAGGAGGATTGCTTGAACCCAGGAGGTTGAGGCTGCAGTAAGCCGTGATCACACCACTGTATTCCAGCCTGGGTGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAAAGATCCAAACTGGGGAAACTTAGATTGCCTGGGCCAGCTATGAGATCCTGTGGTGGTAAACTCTCCATGGCTGGACACAGTGACTCACGTCGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCTCTTGAAGCCAGGAGTTCAAGACCAGCCTGGGCAAGATAGCGAGACAAACACATTTTCTCTACAAAAAAATAAAATAAGATCTACATTCTACAATCATCATGTGTTTTTCAGTCCTGCCATGTGTATGTGCTCTTGGCTGACTATAAATAAGTCAAAAAGCTGTTTGAAAGGGAACAAGGCATTTGTGTTCAAAGTTTGACTCACAGGCCATCACAGAAGTGGCATACAAGAGAGATAAACAGTTAAGATTTCACAGGGAAGGGACCACTGACATTCATAGCTGCCCTGCACATTAATGACTCAGGTCAAATGCTAGGAAATGAATACCCTGTCCTTCCCAGTCCACAGTGATCTCTCCATCTCCTGAAGTGTGGCTTCATCTCAGTCTTAAAGAGAGGAATGGAAACATCACTAAACCTGCCGTCAGAAGTCTTCTGTTTATATCTTGTCTCTGCCACCTTCTGTCTGTGATCTTGGGCAAATAATATGAAAAGACGCATGAATGCACAGAGGCTAAGAGCTTAGGCTTTAGAGACAGACAGACCTAGATTCAAAACCTAGCTCTGCCATTTTTTTATCTATGTGGCCTTGGTCAGGATACTTAACTTCTCAAGCTTTCCATTCTCTCATCTTTATTTTATTTTATTTTATTTTATTTTTTCTTTGAGGTGGAGTCTTGTTCCAGGTTAGCGTGCAGTGGCACGATCTCAGCTCACAGCAACCTCCGCCTCCCAGGTTCCAGCAATTCTCGTGCCTCAGTCTCTCGAGTAGCTGGGATTACAGGCGTGTGCCATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGGCTGGTCTTGAACTCCTCACGTTAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCAGTCCTCTCATCTTTAAGAGGGAAATAGCAAGGCTATTTGTGCAGATTAAATGCGGCAGCATGAAGGAGCCAGTGCATAATAGTGCTCAATAAATGCTAGTTTCCTTTCCCCCAGAATGGCACAATTATTTTTAAACCTCAAGTCTGTCTGATTTACCCAGCCCTTCACTGAGAGGCAAGATTCAGTACTACTATACTGTTTTATGCCTCCCCAAATTTATATTATGATGGAATGCATTGCAAATGTCCATGATTGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGGAGAAAAGGGAAGGGAGGGGGAAAGGAAGGCTGGGGAAGGGAAAGGGGGTAGGGAAGGAGGGAAGGTACCACAGCCATAGTCTCACACTGAGACATGAGCGGGACCTGAGCATTGGCATTGGCAGTGCCCTTTCAATCAGATGTGTGCTCTCCAGTTCCCACAGTCCTTACCTGGTCCCCTTCATCCTGTATTTACTTGCTTACCCCCGGAAAGCATTTGAGGCTGTGATCCCAGCTTTAGGGTACTGTGTTTTTGGGGATTGTTCTGAACTCACAGATAAAATGGTGAATTTATATTTGTTGGTGTTTCAATACATACTCATCTCTTAAAAAGAGAGACAGCATGAATTAAAGGGTCAAAGCCCAGATTACTAATCGTTTCTTTCTATTCTTACAG
Seq C2 exon
CTCGGCCTTCTCCCTGGGTTCCTGCCCTTGCTGATGAATGGAATACCCTAGATCAGGAAGTGACAACCACACGGCTTCCTGCTGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592:ENST00000328086:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.946
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains