RnoINT0169020 @ rn6
Intron Retention
Gene
ENSRNOG00000024245 | Zkscan2
Description
zinc finger with KRAB and SCAN domains 2 [Source:RGD Symbol;Acc:1359568]
Coordinates
chr1:193454510-193457845:-
Coord C1 exon
chr1:193457659-193457845
Coord A exon
chr1:193454581-193457658
Coord C2 exon
chr1:193454510-193454580
Length
3078 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TGTTTCTTCTCTTTTTCTAGCTC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GTCAGTGGCCCTCAGCACTCAGAGAAGCAAGCCCCACCTAGAACTGTGTGGGAAGTAGCTAACTATGAGCCAGAGCAACTGGAGACCCAGCACAGGGTTGTTTCTCGGGAGGAAGCTGGAAACTTCCACTCAGGACACCAGGAACAGCTGAACCAAAAAAGGGAGCATAGGCCATTACCTAAGAATG
Seq A exon
GTAAGGGACTCAAAGTACACCCAGGTCAGAGACCACGTAGTTTACACTATATCCCTAACACTATGGCTTGCTCGTAAAGGTCCCTTCAATATCTATTTGAAAAATAAATTGAATATTTGAAACAATTTTTTCATTTGTTTTAAGAGTCAGAAATATTTGCTATCAAAATAAAATGGGATCATAAAGATGGAAATTAGGGAAACTTAGATTGCCCAGGGAAGCTTTGAGTCTTACTCAGTTATTTTTAAATGTCCATTCAGTGTTCAGTTTGTGTCTTTAAGTCATGCCACATGTATATGTGCTCTTGAAAAACTATTGAGAAATGGAAACAAGGTATTTTTATTCCTAAACTTGACTTACAAGATAAGGCACCCCAGAATGGTGTATGAGAGGGATAAATGGTGAGACTTCCCAAACAAGGGACACCAGTGTTCTGAAGAGGTATTACCCCCACAGACTCATGTGTTTGAATGCTTGACCCATAGGGCATGGTACTATTAGGAGGTGTGACCTTGTTGAAGGACGTGTGTCACTGTGGGACAGGCTTTGAGTTTTCCTATGCCTCAGCTACACTCAGCGTGGTCTCCTTCTGCCGCCTGTGGATCCAGTTGTAGAACTCTCGGCTCCTCCAGCAGCATGACCGCCTGCACACTGCCACACTTGCTTCCAGGATGATAATGGAGTGAACCCCTGACACTGTGAGCCAGCCCCAGTTAAATGTTGTCCTTATAAGACTTCCCCTGTCATGGTGTCTCTGCACAGCAGTAAGACAACCAGCACGCAGAGCCGCCCTCCATAGGAATACAGAAAGTCAAATATGGGGGAAAGAGGTGTCCTGTCCTTCCCAGTCCAGTTTCCTTTCCATCCCCTGAAGTGTGGTTTCATCCCAGGCCAGAAGTGAGTTGTGGAAGGATCCTATCTAAAGACTTCATTCACATCTTATCTGCCCCAAGACTATGATCTTGGGTGAGAAGCAGAAAGACAAGGATTAGTGCCTAGAGGTTAAGATCTTGGGCTGGAAGAGGCAAGCAGACCTGAGTTCATAACCCAGCTCTCCCATTTCTTTTCTTTTTTTTTTTTTTTTCTTTTTCTTTTTTTCGGACCTGGGGACCAAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAGCTCTCCCATTTCTATTTATTTTCTCCCCTAATGTCAAAATTATTCTTAAACTTCAATTCTCAAAAAATAGGAAATATTTGCAATGGCTATATTGTCGTTGCTGAGTCCAACCATAAATAAGAATGTGTTGCAAATATTAGTGGATTCTGAATTAGCTGTTATGTTCCTTAGCGTCCTAGCTTCCTTATCATGTGAGTTAGGTAGCTCTAATGACTTTAGCTGATAAGCTCAGTGTGACAGCAAATGTGTATTTATAATGTCTTGCCATCATTGGCATCCATGATGATAAAAAGGTTTTTTAGCTTGTTGAAGACTGAGGGATAGAGAACAGAAATTTGAGGGCTAGATTCCTCAGAAAGATGGTTAGCTCTGAAGGAATGTGATTTCAGCCATATGCTTTTCTGAGACCCTGCTGTTTCCAAGAAAATTATTTGGGGGCCGGTAAGATGGCTCAGCAGGTAAAAATGCTTCCCGCCAAACCTAATTACCTAAGTTCAGTCCTGAAGACCCACATGGTGAAAAGAGAAAACCAGCTCCTGAAAACTGTCCTCTAGCATCCATACACAATTCGTGGCATTCATGTGCACATGTGTGCACGCATGCACACACACACACACTCAGAATACGCAGATAAAATGTAATTTTTAAAAATGAGGTGGGTTTTGAGGTGTTTGTTTTTTGTTTTTGTTTTTACCTCTATAGAAAGCAGGTAGATCAAGCTTCTGAGATCTGTTCACAAATAAGTTACACTTGTCAGTTTCCCTGGTGAACTCTGAGGAGAAAGAACTTCTTTCTCCTACCCTGAGGGGGTTAAATTCAAATGTTTGCTGTGCCCATGGCTGTACTGCTTGCTGTGTTGGCAGGATTTATCTAAGTTCTTGGTTCTTAAACTGTCCACTTATGTGAGGGATGACAAATTGATAACTTGTACAGCAAATGGGACTTGTTATATTTTACTAACAAAGAATTGTTGTTTGGGATTTGGGGGTTTGGTTTCAGTTTTGGTTTTGTTCTTTGTATTTAAGGTTTACAATTTGAGATTTTACAGAAGTCCCAGGTTTCTGGTGTCTTACTTAGAGTTTCTATTGCTGTGAGAAACACCATGATCAAGAGCAACTCGGGAAGGAAACAGGTTATTTCACTTCCATTTCCACATCAAAAGAAGTCAAGATAGGAACCTTGAGACAGGAGCTGATACAGAGGCCATGGAGAGATTCTGCTTACCAAATAGTCCTTCATGACTTGATCAACCTACTTTCTTATACCATCTATGCCCACCTACCTAGTAGTAACACTGTCAACAATTGGCTCGGCCCTCTCAGATCAGTCATCAATCAAGACAGTACCCCTCAGGCTTGTCTACAGGCTGGTAGACTGGCAGGGGTGTGGAGTGCATTTTCTCAATAGAAGTTCCCTCTTCCCAGATGACTAGCATATGTTAAGTTTACATAAAAACTAGCCACACATCTGGCTTCTCTTGGAAAAGTCAGAAATGATGAGTCTCCAAGTGCCACAATCTGACACTGAAGCATCGTCATAGGCCATGCCCTGCAGTTCCCCGGCCCCAGCCCTCTCCTTATGCACTTTACCTGCTTGTTCCTGAGCCATTTGAGTTGTGAGCCCAGCGTTAGGATAAGGTAGATTTGCTCTGATCTCACTAAAAATAATTTCTATGTGTGGGTTTTAATATCTTCTCATTTCTTAAAAGGAGAAACAGCTGCTGGGTGTGGTGGTGCACACCTTTAGAGGCAGGTGGATCCCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTCCAGGACATCCAGGGCTATACACACACACACACACACACACACACACACACACACACACACACACTTCAAAATACTATACACAATAACTGTTTCTTCTCTTTTTCTAG
Seq C2 exon
CTCACTCTTCTGTCTGGGCTCCTGTCCCTAGTAGTGAGTGGACCGCTGTAGATGAGGAGGCGACAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024245:ENSRNOT00000020281:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]