HsaINT0185869 @ hg38
Intron Retention
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:HGNC:13853]
Coordinates
chr6:28363303-28363815:+
Coord C1 exon
chr6:28363303-28363385
Coord A exon
chr6:28363386-28363691
Coord C2 exon
chr6:28363692-28363815
Length
306 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGATTACCTATTGTTTTAGGGG
3' ss Score
6.06
Exon sequences
Seq C1 exon
TTCTCCAGGTCCCCGTGCTTGCCCATGGAGGATGCTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAG
Seq A exon
GTGAGCTGGAGCCCTATCCCTCCCCCAATGCCCCTCACTACTATTGAGCTTCCTGTGAAGACTCCTCACTCCCCATTCCCCTCCACCCCAATCCTAGATCCTCCATACAGATCTCAAATGGGATCTGCATTTTCTCATCTATCTCGAGGTTGTTTATCATTAACTTTATTTAGGTGCCCACTTAAGAGGCTTTTCCTGTTTATTACTAGCTGTTGGCAGGAATGGGGCCTGGGGGTGCTTCCCAGATCTTCCCCACTCCACCATTTTGGTCAGCCCCTTCTTCAATGGGATTACCTATTGTTTTAG
Seq C2 exon
GGGTTGTTGAAAGTGGAAGATGTGGCCCTGACCCTCACCCCTGAATGGACACAGCAGGATTCATCTCAGGGGAATCTCTGTAGAGATGAAAAGCAGGAGAACCATGGCAGCCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298:ENST00000377255:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCAGGTCCCCGTGC
R:
GACCAGGCTGCCATGGTTC
Band lengths:
200-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains