HsaINT0185989 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20656921-20657916:+
Coord C1 exon
chr13:20656921-20657172
Coord A exon
chr13:20657173-20657795
Coord C2 exon
chr13:20657796-20657916
Length
623 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TTTCACTTTTATTTTTTAAGATA
3' ss Score
8.53
Exon sequences
Seq C1 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAGCTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAG
Seq A exon
GTAGTGTAACAGATTTCTATTTTTATTTTTATTTTTAAATTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCAGTCTCGGCTCACCGCAACCTCTACCTCCTGGGTTCAAGCAATTCTCCTCCCTCAGCCTCCTGAGTGGCTGGGATTACAGGCAGGCGCCACCATGCCTGGCTAACTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTGAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCATGGCCCAGATTTCTATTTTGGGATTGTCTATGGTAGGGATATCCAAACCTTGCCTTACTAAAGACCACCTGGGTCACTTGTTAAGAACCTAAGGACTGTCAGTTTTATAAAATAAGACAACCTATGTCTTAAGATGTCTCAGTTCCTTTTGTTTGAAAAATTGTACATTACCAGAAGCCATAACTTAAAACTCCAAGGGGCACCTGGTCCTATTCTTTGGTATAACAGACACTAGGAGTGATGTTTATATCTTTCTTCAAGATTAGTTTAGGAGGTTTATTTCACTTTTATTTTTTAAG
Seq C2 exon
ATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAACACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.488
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
NA
C2:
PF120123=DUF3504=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAATATTCTCTCGAGTTGAAGA
R:
CAGGACATCTGGAAGGATTGGC
Band lengths:
342-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)