MmuINT0180473 @ mm9
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57575689-57577139:+
Coord C1 exon
chr14:57575689-57575940
Coord A exon
chr14:57575941-57577018
Coord C2 exon
chr14:57577019-57577139
Length
1078 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TTTTGTTGTTGTTGTTAAAGATA
3' ss Score
5.33
Exon sequences
Seq C1 exon
GGTCAATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGCTATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAG
Seq A exon
GTAGTGTAACTTTCTATAAAAACAAGACTTATCTCTATATGCATGAATGTATTTTTCCAGCATGAATATATGTGCATCATACATTTCAGTGTTTGCTGGTGTCATAAGAAGGTGTCAGACCCCTTGGAACTGGGGTATGAATGATTGTGAGTCACCGTGTAGATGCAGGGAACTCAACCTAGGACTTCTGCAAGAGCAGTAAGTGCTCTTAAACTCTGAGCCATCACTGGCCCTGATAGTATAGCATTTTTATTTGGAGATTGTCTGTGGTGGGAATGTTCAACTTGCCTTACTGAAGTCCACCTTTGCCATTCATTAAGAGACTAAAGACAGTTACTTTAATAAACACAACAAACAGTGTATGTCTGTATGTCCGGCTTTGTTGTTGTTTTGGTTTTGTTTCTTTTTGAGATGAGGTCTTACTATGCTGTGTTGGCTAGTCTGGAACTCCTGTGTAGACCAGGATTACCTCACACTCCTAGAGATCCATTTGCTGCCTTTAAATGTCTTATTGTTGTAGTTTGTTTTGAGATAAGATATCTAGTCCAAACTGGCCTTAAGCCGTATAGCAAAGAAGGACCTTGGATCTGTGATCCTCCCTATTCTGAGAAGACTGGCATGAACCACTCACTATACCTGTTTTTAAGCTGAGCCTCTAGGATCCTTTTCTTGGAAAAATAGTACATTACTAAAAGCTGCCACACAGAAAATCCTGAAGGGCACCTAATCCTATGTTGCTAAAACAGGTACTAAGGGTAAATGCCTTCCCTAGGAATTAGTTTTAGGGGGTTGTGGGATAACTCATTGGGTAAAACCATTTGCTGTGCAAGTCTGACCACCTGAATTGGAGTTCTTGGAGCCCACATAAAATACCAAATGCAGTAGAGTGAGGAGAGGAGAGACAGAATCACGAGGAAGCTCCTAGGCCAGCTATCCTGGAGTATCCAGTGCAGTAGTAGAGACCTCTCCTGCCTTGGAGAGGTGGCACTTATTCACACACATGTCATACAGATACACAAACTCACAGGAAAGGAAAAAGATTGGTGTAGGAGCCTTACTTTTGTTGTTGTTGTTAAAG
Seq C2 exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-Zmym2:NM_029498:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.506
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
NA
C2:
PF120123=DUF3504=FE(23.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAATTTTCTCTCGAGTTGAAGA
R:
CAGGACATCTAGAAGGGTTGGC
Band lengths:
342-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: