RnoINT0169124 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37224235-37225781:+
Coord C1 exon
chr15:37224235-37224486
Coord A exon
chr15:37224487-37225660
Coord C2 exon
chr15:37225661-37225781
Length
1174 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
TGTTGTTGTTGTTGTTGAAGATA
3' ss Score
5.12
Exon sequences
Seq C1 exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAACACCCTATTCTACTTTAACACTAAATATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCGTGTCTTCGCTATCAGGTGTCTTCCTTGTGTGGAACAGACAATGAAG
Seq A exon
GTAGTGTAACTTTTTAAACACAAGATGTGTCTCTATTTTATATGCTTGAATGTATGTGTGCATCACACATGGCCAGTGCTCGCTGGTATCATAAGAAGTGTCAGACCCCCTGGAACTGGGCTTTGAATGGTTGTGAGCCACCATGTAGGTGCAGGGACCTGAACTCAGGTATTCTGCAAGAGCAATACATACTCTTAACCTCTGAGCCATCACTGGCCCTGATAGTATAGCAGTTTTATTTGGAGATTGTCTATGGTGGGAGTATTCAAACTTTCCTTACTAAAGCAAGTCATTCATTAAGAGACTTTCCTAAAACACAGCAGACTGTGTATTTGGGGGTTTGTTGTTGTTTTAGTTTTTGTTGTTTTGGTTTTCTTTGTTTCTTTTTCAGACAGGGTCTCACTATATTGTGTTGGCTAGTCTAGAATTCCCTGTGTAGACTAGGGCTGCCTCAAACTCCTAGAGATCCATTTGCTTTTTTCAAACTGTATTATCTTAAAATGTCTTATGTCTTGTTGTGGTTCGTTTTGAGATAAGATTTCTAGTCCAAACTGGCCTTAAGCCATATAGCAAAGAATGACCTTGAATCTGTGGTTCCTATTCTGAGACACAGGCATGAACCACTATACCTGTGTTTAAGCTGAGCTCAGGTTCAGACTGGGCCTTCTTGCATACTGGGCCAGCACTCTACTAACTGAGCTACATTCTCAGCCTCTGGGATCTTTTTCTTGGAAAAATTGTACATTACTAAAAGCTGCCACACAGAAAATCTTGAATGTCACCTAGTGCTATGTTGTTAAAACAGGTACTAAGGGTAAATAGTAATGTCTTCTCTCAGAATTAGTTTTAGGAGGCTGTGGGATAACTCATTGGGTAAAACCATTTGCTGTGCAAGTCTGACTACTTGAATTGGAATCCTGGAGCCCACAGAAAATGCCAGATGCAGGAGAGGGGAGAGGTGAGCTTCTAGGTCAGTTATCCTGGAGTGTACGGAAACAGAAAGACCCCTGCCTTGGATAGGTGGACAGCAAGAACTGACATGCACACATGTTGTGGCACATGTACACCCACGTTCACACACGTCATACATGCACACATACTCATAAGAAAGGGAAAAAAGGTGGTGGTAGGAGCCTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAAG
Seq C2 exon
ATAAAATTGCTACTGGGAAGCGGAAGCATGAAGATGATGAGCCGGTATTTGAGCAAGTTGAGAACACAGCCAACCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.512
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(48.8=98.8)
A:
NA
C2:
PF120123=DUF3504=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAATATTCTCTCGAGTTGAAGA
R:
CAGGACATCTGGAAGGGTTGG
Band lengths:
342-1516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]