HsaINT0186002 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71247345-71247906:-
Coord C1 exon
chrX:71247734-71247906
Coord A exon
chrX:71247511-71247733
Coord C2 exon
chrX:71247345-71247510
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATCCTTTTGACATCCTCAGGCT
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCTGTGTGCTGCTGTACAAACAGGACTTCACTAAGAAGCTGGGCTTGTGCTGTATCACTTGTACTTACTGCTCCCAGACCTGCCAGCGCGGAGTCACCGAGCAACTGGATGGCAGCACCTGGGACTTCTGCAGTGAGGACTGTAAGAGCAAGTACCTGCTGTGGTACTGCAAG
Seq A exon
GTAAGGAGGGTCAGCATGCGAGCGAGGCGGGAAAGAGGGCAGTGGGGAGCACGGGCTGTGGTACTGAGCTCGGGGTGTGGACAGATCTCCAGGGAGGGCAGCCAGCCTTCCATCTCTAAGCTGGCCCGATCTCCAAGGGGAGGAGCATGGCTTATCCCGGGGGAAAGAAAGGGCCCAACGCATTTTAGGGAGGCAGGTCTGACCATCCTTTTGACATCCTCAG
Seq C2 exon
GCTGCCCGGTGCCATGCGTGTAAGCGCCAGGGGAAGCTGCTGGAGACCATCCACTGGCGTGGGCAGATCCGTCATTTCTGCAACCAGCAGTGTCTTCTGCGTTTCTATAGCCAGCAGAACCAACCCAACCTGGATACCCAGAGTGGGCCCGAGAGCCTCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
NA
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGCTGCTGTACAAAC
R:
CAGGTTGGGTTGGTTCTGCTG
Band lengths:
305-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains