RnoINT0169136 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71307738-71308282:-
Coord C1 exon
chrX:71308110-71308282
Coord A exon
chrX:71307904-71308109
Coord C2 exon
chrX:71307738-71307903
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATTCTGTCCATGCCCTTAGGCT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GCTGTGTGCTGCTATACAAGCAAGATTTTACTAAGAAGCTGGGCTTGTGCTGTATCACTTGTACTTACTGCTCCCAAACCTGTCAGCGTGGAGTCACTGAGCAACTGGATGGAAGCACCTGGGACTTTTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
Seq A exon
GTAAGGAGAGTCAACATGTCAGACAGAAGACGGCAGGGGTATGAACTGATGTACTCACATCAGCACCAGCCCTCCAGGGAGGGGAGCAGACCTCTCCAATCTCTAAACTGGTTGAGTCTCCAAAGAGAGAAACCGTGGCTTATCCTCGAGGAAGGGCCCAGCACATTTTCAAAAGGCAGGTCTGACCATTCTGTCCATGCCCTTAG
Seq C2 exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGAAAGCTGCTGGAAACCATCCACTGGCGCGGGCAAATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGCTTCTACAGTCAGCAGAACCAACCCAACTTGGATACCCAGAGTGGGCCAGAAAGCCTCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.232
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
NA
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTTGTGCTGTATCACT
R:
TGTTCAGGAGGCTTTCTGGC
Band lengths:
301-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]