GgaINT0075048 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2279687-2280448:+
Coord C1 exon
chr4:2279687-2279859
Coord A exon
chr4:2279860-2280282
Coord C2 exon
chr4:2280283-2280448
Length
423 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CCTGCTGATGCGGGCTTTAGGCA
3' ss Score
4.15
Exon sequences
Seq C1 exon
GGTGTGTGCTTCTTTACAAACAGGATTTCACCAAGAACCTGGGCCTGTGCTGCATCACCTGCACCTACTGTTCTCAGACCTGCCAGCGGGCGGTCACCGAGCAGCTGGAGGGCAGCACCTGGGACTTCTGTAGTGAAGACTGCAAAAGCAAATACTTGCTCTGGTACTTCAAG
Seq A exon
GTCAGTATTGGCACTGGCAGCTTGTGCTAAGTGCTGTGGTGGGCACGGCACCCAGATAAGTGGGCATTGCACTGAGGAAGCTCGCACTGCTGGAGTCTGGCTGGCACTGCTGCGGAGAACCTGGCACTGCTGGAGTCCTGCCTGGCAATGACGGGACACTGCTACGGGGAAGCTCACGTAGCTGGAGTCCCCAGCTGATCCTGCCAGAGCACTGCACTGAGGAAGCTCACAGTGCTGGATCCGCGGCTAGCGCTGCAGGGAGAAGTTCGCACCGCTGGAGACCCCGGCTGGCACTGGCAGGGCACTGCTGTGGGGAAGCTCACAGCACCTTGCCATGTGCACCTTTCACTGGAGAGTTGTGTTGCACTCGGAGGGGGTGTGGTTAGTTACTCGTTGTTTCTCTCCTGCTGATGCGGGCTTTAG
Seq C2 exon
GCAGCTCGGTGCCATGCCTGCAAGCGTCAGGGGAAGCTGCTGGAAACCATCCACTGGCGAGGGCAAATCAAACACTTCTGCAACCAGCAGTGTCTGCTGCGATTTTACAATCAACAGAACCAGCCCAACCTGGACACGCAGAAGGGGCCCGAGAGCCTGCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
A:
NA
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGTGCTTCTTTACAAACAGG
R:
TGTTCAGCAGGCTCTCGGG
Band lengths:
339-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]