GgaEX1065282 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2278955-2284238:+
Coord C1 exon
chr4:2278955-2279105
Coord A exon
chr4:2279687-2279859
Coord C2 exon
chr4:2284180-2284238
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCCTATTGTTTCTCCGCAGGGT
3' ss Score
12.45
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACAAGATGTATCAGTTCTGCTGCAAGGATTGCTGTGAGGACTTCAAGCGGCTACGAGGGGTAGTGTCTCAGTGTGAGCACTGCAAGCAGGAGAAGCTGCTGCATGAGAAGATCCGCTTCTCAGGGGTGGAGAAGAACTTCTGCAGCGAAG
Seq A exon
GGTGTGTGCTTCTTTACAAACAGGATTTCACCAAGAACCTGGGCCTGTGCTGCATCACCTGCACCTACTGTTCTCAGACCTGCCAGCGGGCGGTCACCGAGCAGCTGGAGGGCAGCACCTGGGACTTCTGTAGTGAAGACTGCAAAAGCAAATACTTGCTCTGGTACTTCAAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-7/10=5-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
A:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
NO
Main Skipping Isoform:
ENSGALT00000008873fB838
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGATGTATCAGTTCTGCTGC
R:
CGTGTTAGTCTCTGCCTTCTGA
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]