GgaEX1066387 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:2280283-2284238:+
Coord C1 exon
chr4:2280283-2280448
Coord A exon
chr4:2283434-2283589
Coord C2 exon
chr4:2284180-2284238
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTGCTTTCCTTGCAGGTG
3' ss Score
12.97
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGCTCGGTGCCATGCCTGCAAGCGTCAGGGGAAGCTGCTGGAAACCATCCACTGGCGAGGGCAAATCAAACACTTCTGCAACCAGCAGTGTCTGCTGCGATTTTACAATCAACAGAACCAGCCCAACCTGGACACGCAGAAGGGGCCCGAGAGCCTGCTGAACA
Seq A exon
GTGTCTCCTTCACACGCGGCCCACGGTGGGTCAGCGCTGTAGAAGGCAGTTCTTTTTCTCAGCCATTCAGGTAACCAGGGTTCACGGGAGGCTTGGATGAAGGTGCTCTTTTAGCTCAGCAGCCTCTGAGATGGGTGCAGGTGCTCTGCAAAGCAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-10/10=8-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCGGTGCCATGCCT
R:
AGTCTCTGCCTTCTGATGGGA
Band lengths:
218-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]