GgaEX0007717 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2280283-2284238:+
Coord C1 exon
chr4:2280283-2280448
Coord A exon
chr4:2280652-2280876
Coord C2 exon
chr4:2284180-2284238
Length
225 bp
Sequences
Splice sites
3' ss Seq
TATGGTTCTATGACACACAGGGC
3' ss Score
3.85
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCAGCTCGGTGCCATGCCTGCAAGCGTCAGGGGAAGCTGCTGGAAACCATCCACTGGCGAGGGCAAATCAAACACTTCTGCAACCAGCAGTGTCTGCTGCGATTTTACAATCAACAGAACCAGCCCAACCTGGACACGCAGAAGGGGCCCGAGAGCCTGCTGAACA
Seq A exon
GGCCCAGACGGGAGGAGCCGGTGCCAGCGTGCTGCCTGTAGCTCACACTCTTAGCGAGGATACTCAGGGATTTAATGGGCGATTCCATCCTCATGTTGCCAGCGGAGAGCTCGATTTGCAGGGTTAGGGGACAGCGTGGCTTGGCATGATAATCCACCTGCAGCCCCACACCACCTCCGAGCTGTGACCTTCTCAGATCTCATAAGCTAATCAGGATTGGGCCAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-9/10=8-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000008873fB839
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGCCATGCCTGCAA
R:
CGTGTTAGTCTCTGCCTTCTGA
Band lengths:
220-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]