GgaEX1065281 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2278549-2284238:+
Coord C1 exon
chr4:2278549-2278635
Coord A exon
chr4:2278955-2279105
Coord C2 exon
chr4:2284180-2284238
Length
151 bp
Sequences
Splice sites
3' ss Seq
GGTGGTGGTCTTTTTGGCAGGAC
3' ss Score
5.02
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CACACCAGCCCGGAAGGTGGGATCCACCTGAACTGCCATTACTGCCACAATCTTTTCACCGGGAAGCCAGAGATCCTAGACTGGCAG
Seq A exon
GACAAGATGTATCAGTTCTGCTGCAAGGATTGCTGTGAGGACTTCAAGCGGCTACGAGGGGTAGTGTCTCAGTGTGAGCACTGCAAGCAGGAGAAGCTGCTGCATGAGAAGATCCGCTTCTCAGGGGTGGAGAAGAACTTCTGCAGCGAAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-5/10=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=86.2)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCCACCTGAACTGCCAT
R:
AGTCTCTGCCTTCTGATGGGA
Band lengths:
122-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]