MmuEX6045436 @ mm9
Exon Skipping
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:98608828-98609600:-
Coord C1 exon
chrX:98609514-98609600
Coord A exon
chrX:98609243-98609393
Coord C2 exon
chrX:98608828-98609000
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTGTTTCCACCTCAGGAC
3' ss Score
9.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATACTAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCATAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGAGTGGCAG
Seq A exon
GACCAGGTCTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTATCCCAGTGTGAGCACTGCCGGCAGGAAAAGCTCCTGCACGAGAAGCTTCGATTCAGTGGGGTAGAGAAAAGCTTCTGCAGTGAAG
Seq C2 exon
GCTGTGTACTGCTGTACAAGCAAGATTTTACTAAGAAGCTGGGCTTATGTTGTATCACCTGTACTTACTGTTCCCAAACCTGCCAGCGTGGTGTCACTGAGCAGCTGGATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=86.2)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
C2:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCACCTGAGCTGTCAC
R:
ACCATAACAGGTACTTGGTCTTACA
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: