RnoEX0102025 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71308110-71308884:-
Coord C1 exon
chrX:71308798-71308884
Coord A exon
chrX:71308532-71308682
Coord C2 exon
chrX:71308110-71308282
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTGTTTCCACCTCAGGAC
3' ss Score
9.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATACTAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCATAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGAGTGGCAG
Seq A exon
GACCAGGTCTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTATCCCAGTGTGAGCACTGCCGGCAGGAAAAGCTCCTGCATGAGAAACTCCGATTCAGTGGGGTAGAGAAAAGCTTCTGCAGTGAAG
Seq C2 exon
GCTGTGTGCTGCTATACAAGCAAGATTTTACTAAGAAGCTGGGCTTGTGCTGTATCACTTGTACTTACTGCTCCCAAACCTGTCAGCGTGGAGTCACTGAGCAACTGGATGGAAGCACCTGGGACTTTTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-'17-19,'17-17,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(61.0=86.2)
A:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
C2:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATTCACCTGAGCTGTCAC
R:
ACCATAACAGGTACTTGGTCTTACA
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]