GgaEX0007714 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2276400-2284238:+
Coord C1 exon
chr4:2276400-2276515
Coord A exon
chr4:2278549-2278635
Coord C2 exon
chr4:2284180-2284238
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTTGTCTTCTACAGCAC
3' ss Score
10.51
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCCCCTAGGCCCTGCAGCTTCTGCAGAAAGAGTTTATCTGAACCCTGCTATTACAACAAGACAGACCGGGTTGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAATTCCAG
Seq A exon
CACACCAGCCCGGAAGGTGGGATCCACCTGAACTGCCATTACTGCCACAATCTTTTCACCGGGAAGCCAGAGATCCTAGACTGGCAG
Seq C2 exon
GTCAATCTTCAGAAACAAAACCACCCGCTCCTTCCCATCAGAAGGCAGAGACTAACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-4/10=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
PF064679=zf-FCS=PU(61.0=86.2)
C2:
NO
Main Skipping Isoform:
ENSGALT00000008873fB13989
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGCCCTGCAGCTTCT
R:
CGTGTTAGTCTCTGCCTTCTGA
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]