GgaEX0007714 @ galGal3
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2285400-2288105:+
Coord C1 exon
chr4:2285400-2285515
Coord A exon
chr4:2287549-2287635
Coord C2 exon
chr4:2287955-2288105
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTTGTCTTCTACAGCAC
3' ss Score
10.51
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCCCCTAGGCCCTGCAGCTTCTGCAGAAAGAGTTTATCTGAACCCTGCTATTACAACAAGACAGACCGGGTTGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAATTCCAG
Seq A exon
CACACCAGCCCGGAAGGTGGGATCCACCTGAACTGCCATTACTGCCACAATCTTTTCACCGGGAAGCCAGAGATCCTAGACTGGCAG
Seq C2 exon
GACAAGATGTATCAGTTCTGCTGCAAGGATTGCTGTGAGGACTTCAAGCGGCTACGAGGGGTAGTGTCTCAGTGTGAGCACTGCAAGCAGGAGAAGCTGCTGCATGAGAAGATCCGCTTCTCAGGGGTGGAGAAGAACTTCTGCAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533-'11-12,'11-11,13-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
PF064679=zf-FCS=PU(61.0=86.2)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACCAATTCTGCAGCCCC
R:
TCTTCTCCACCCCTGAGAAGC
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]