RnoEX0102024 @ rn6
Exon Skipping
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71308532-71309158:-
Coord C1 exon
chrX:71309043-71309158
Coord A exon
chrX:71308798-71308884
Coord C2 exon
chrX:71308532-71308682
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCCTTCCCTCCAGCAT
3' ss Score
10.81
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCTTGTTACTACAACAAAGTTGATCGCACAGTCTACCAGTTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
Seq A exon
CATACTAGCCCTGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCATAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGAGTGGCAG
Seq C2 exon
GACCAGGTCTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTATCCCAGTGTGAGCACTGCCGGCAGGAAAAGCTCCTGCATGAGAAACTCCGATTCAGTGGGGTAGAGAAAAGCTTCTGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
PF064679=zf-FCS=PU(61.0=86.2)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACAGTCTACCAGTTCTGC
R:
ACCCCACTGAATCGGAGTTTC
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]