DreEX6035994 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21632778-21634734:-
Coord C1 exon
chr9:21634619-21634734
Coord A exon
chr9:21634376-21634498
Coord C2 exon
chr9:21632778-21632928
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTTTGCTATCCAAATGTAGAAT
3' ss Score
6.58
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATTCTGAGCCATCGTGCCACTTCTGTAAGAGAAATGCATTACCTCAGTATCAGGCAACTTTACCTGAAGGAAAGGTTTTGAGCTTTTGCAGTTCACAGTGTGTCACCAAGTTTCAG
Seq A exon
AATGCCACAATCCAAACATCAACCAATGGGCAACTTCCTGCTTCAGCTTCTGAAGACATCCAGCTGAAGTGTAACTATTGTCGCAGTTCTTTCAGCCTGAAGCCAGAGGTTCTGGAATGGGAG
Seq C2 exon
GATAAGGTGTATCAGTTCTGCAGCAAGACCTGTTGTGAGGACTACAAGAAGCTCCACTGCATCGTGACGTTCTGCGAGTTCTGTCAGGAAGAGAAGACTCTGCATGAGACTGTGAAGTTCTCGGGGGTGAAGAGACCCTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'14-9,'14-8,15-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=94.9)
A:
PF064679=zf-FCS=PU(60.0=58.5)
C2:
PF064679=zf-FCS=PD(35.0=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGTGCCACTTCTGTAA
R:
GTCTCTTCACCCCCGAGAACT
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]