HsaEX6039452 @ hg38
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20027203-20034404:+
Coord C1 exon
chr13:20027203-20027318
Coord A exon
chr13:20031319-20031435
Coord C2 exon
chr13:20034254-20034404
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTCTTTGTTTTAGGCT
3' ss Score
12.36
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
Seq A exon
GCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTAGCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGGAATGGGAG
Seq C2 exon
AACAAAGTGCATCAGTTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'40-43,'40-41,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
PF064679=zf-FCS=PU(61.0=64.1)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTTTTGTAAGCGAAACTCT
R:
ACAGAAAGGTCTCTTAACGCCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains