BtaEX0041034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36414375-36419766:-
Coord C1 exon
chr12:36419651-36419766
Coord A exon
chr12:36416575-36416691
Coord C2 exon
chr12:36414375-36414525
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTGCTCTGTTTTAGGCT
3' ss Score
11.9
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGGAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAGTTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTCCAG
Seq A exon
GCTCTCAGCATGCAGTCGTCTCCCAACGGCCAGTTTGTAGCGCCAAGTGATATTCAATTGAAGTGCAACTATTGCAAAAACTCTTTCTGTTCAAAGCCAGAAATCTTGGAATGGGAG
Seq C2 exon
AACAAAGTTCATCAATTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGCTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403_MULTIEX3-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
PF064679=zf-FCS=PU(61.0=64.1)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTTTTGTAAGCGGAACT
R:
ACAGAAAGGTCTCTTAACGCCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development