GgaEX6006359 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183367056-183373616:-
Coord C1 exon
chr1:183373501-183373616
Coord A exon
chr1:183367784-183367900
Coord C2 exon
chr1:183367056-183367206
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATATGTTTTTGTTTTTCAGGCT
3' ss Score
10.24
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTATGGAAATTATTTGCCACTTTTGTAAACGAAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAGTTCCAGTTGTGTAGCTAAATTTCAG
Seq A exon
GCTCTCAGTGATCAGTCTTCAACAAATGGTCAGTTTGTGTCTCCTGGTGATATTCAGTTGAAATGCAATTATTGCAAGAGTTCTTTTTGTTCAAAGCCAGAAGTGCTAGAATGGGAG
Seq C2 exon
AATAAAGTGTATCAGTTCTGCAGCAGAGCATGTTCTGATGATTATAAGAAACTGCACTGCATAGTTACGTACTGTGAATACTGTCAAGAGGAGAAAACACTGCATGAGACTGTGAATTTCTCTGGCATCAAAAGACCATTTTGTAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'15-23,'15-22,16-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=92.3)
A:
PF064679=zf-FCS=PU(61.0=64.1)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACTTTTGTAAACGAAACTCT
R:
AATGGTCTTTTGATGCCAGAGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]