RnoEX0102009 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37192763-37198284:+
Coord C1 exon
chr15:37192763-37192878
Coord A exon
chr15:37196007-37196123
Coord C2 exon
chr15:37198128-37198284
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTTCTCTATTTTAGGCT
3' ss Score
12.04
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACGATGCCTGATGGAAAACTGTATAATTTTTGCAATTCTAGTTGTGTGGCTAAATTTCAG
Seq A exon
GCTCTAAGCATGCAGTCATCTCCAAATGGCCAGTTTGTAGCACCTAGTGATATTCAGTTGAAATGCAACTACTGTAAAAATTCCTTTTGTTCAAAACCAGAAATCTTGGAATGGGAG
Seq C2 exon
AACAAAGTGCATCAGTTCTGCAGCAGAACTTGCTCAGATGACTATAAGAAGTTGCATTGCATAGTTACATATTGCGAATACTGCCAAGAGGAGAAGACTCTGCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAGGCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-'14-17,'14-16,16-17
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
PF064679=zf-FCS=PU(61.0=64.1)
C2:
PF064679=zf-FCS=PD(34.1=26.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTTTTGTAAGCGAAACTCT
R:
ACAGAAAGGTCTCTTAACGCCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]