BtaEX6006462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84694947-84695592:+
Coord C1 exon
chrX:84694947-84695062
Coord A exon
chrX:84695228-84695314
Coord C2 exon
chrX:84695442-84695592
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTCCTTCCCTCCAGCGC
3' ss Score
11.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
Seq A exon
CGCACGAGCCCCGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCACAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGACTGGCAG
Seq C2 exon
GACCAGGTGTTCCAGTTCTGCTGTCGTGATTGCTGTGAGGACTTCAAGCGCCTCCGGGGTGTGGTGTCCCAGTGTGAGCATTGCCGGCAGGAGAAACTCCTGCATGAGAAGCTCCGATTCAGTGGGGTGGAGAAGAGCTTCTGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
PF064679=zf-FCS=PU(61.0=86.2)
C2:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACCAATTCTGCAGCCCC
R:
GAAGCTCTTCTCCACCCCACT
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]