GgaEX0007713 @ galGal4
Exon Skipping
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2275691-2278635:+
Coord C1 exon
chr4:2275691-2275841
Coord A exon
chr4:2276400-2276515
Coord C2 exon
chr4:2278549-2278635
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTCCTATCTGTTTCATCAGGTC
3' ss Score
9.13
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAGAACACTCGAGTCTACCCTTGCATGTGGTGCAAGACGCTGTGCAAAAACTTTGACATGCTGCCCAATGTGGATCGCAGTGGCAAGATGGGACTGTTCTGCTCCATTTGCTGCACTACCTCCCACAAAGTGAAGCAGTCGGGCTTGGTTG
Seq A exon
GTCCCCCTAGGCCCTGCAGCTTCTGCAGAAAGAGTTTATCTGAACCCTGCTATTACAACAAGACAGACCGGGTTGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAATTCCAG
Seq C2 exon
CACACCAGCCCGGAAGGTGGGATCCACCTGAACTGCCATTACTGCCACAATCTTTTCACCGGGAAGCCAGAGATCCTAGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533_MULTIEX1-2/10=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(5.0=3.9)
A:
PF064679=zf-FCS=PD(92.5=94.9)
C2:
PF064679=zf-FCS=PU(61.0=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCGAGTCTACCCTTGCA
R:
CTGCCAGTCTAGGATCTCTGG
Band lengths:
234-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]