BtaEX6006463 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84694580-84695314:+
Coord C1 exon
chrX:84694580-84694730
Coord A exon
chrX:84694947-84695062
Coord C2 exon
chrX:84695228-84695314
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTCTCTGTGCCCCAGGCC
3' ss Score
10.56
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AAAAACACACGGGTGTACCCATGTGTCTGGTGCAAGACCCTGTGTAAGAACTTTGAGATGCTATCCCATGTGGACCGTAATGGCAAGACCAGCTTGTTCTGTTCCCTGTGCTGTACCACTTCTTACAAAGTGAAGCAGGCAGGGCTCACTG
Seq A exon
GCCCTCCCCGACCCTGCAGCTTCTGCCGCCGCAGCCTCTCTGACCCCTGTTACTACAACAAGGTTGATCGCACAGTCTACCAATTCTGCAGCCCCAGCTGCTGGACCAAGTTCCAG
Seq C2 exon
CGCACGAGCCCCGAGGGGGGCATTCACCTGAGCTGTCACTACTGCCACAGCCTCTTCAGTGGCAAGCCTGAGGTCTTGGACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
PF064679=zf-FCS=PD(90.2=94.9)
C2:
PF064679=zf-FCS=PU(61.0=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACCCATGTGTCTGGTGC
R:
CTGCCAGTCCAAGACCTCAGG
Band lengths:
226-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]