BtaEX6006460 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84695442-84696342:+
Coord C1 exon
chrX:84695442-84695592
Coord A exon
chrX:84695804-84695976
Coord C2 exon
chrX:84696177-84696342
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGCCCCCTTTCCAGGCT
3' ss Score
8.58
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACCAGGTGTTCCAGTTCTGCTGTCGTGATTGCTGTGAGGACTTCAAGCGCCTCCGGGGTGTGGTGTCCCAGTGTGAGCATTGCCGGCAGGAGAAACTCCTGCATGAGAAGCTCCGATTCAGTGGGGTGGAGAAGAGCTTCTGCAGTGAAG
Seq A exon
GCTGTGTGCTGCTATACAAACAGGACTTCACTAAGAAGCTGGGATTATGCTGTATCACTTGTACCTATTGCTCCCAGACCTGCCAGCGCGGAGTCACTGAGCAGCTGGATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGAGCAAGTACCTGCTGTGGTACTGCAAG
Seq C2 exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGGAAGCTGCTGGAGACCATCCACTGGCGTGGGCAGATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGCTTCTACAGCCAGCAGAACCAACCCAACCTGGATACCCAGAGTGGGCCTGAGAGCCTCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.268
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
A:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTGAGGACTTCAAGCG
R:
GGTTGGTTCTGCTGGCTGTAG
Band lengths:
247-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]