HsaEX6052273 @ hg19
Exon Skipping
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70467195-70468162:-
Coord C1 exon
chrX:70468012-70468162
Coord A exon
chrX:70467584-70467756
Coord C2 exon
chrX:70467195-70467360
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTCCTCTTTCCAGGCT
3' ss Score
11.47
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACCAAGTGTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTGTCCCAGTGTGAGCACTGTCGGCAGGAGAAACTCTTGCATGAGAAACTCCGATTCAGCGGAGTGGAGAAAAGCTTCTGCAGCGAAG
Seq A exon
GCTGTGTGCTGCTGTACAAACAGGACTTCACTAAGAAGCTGGGCTTGTGCTGTATCACTTGTACTTACTGCTCCCAGACCTGCCAGCGCGGAGTCACCGAGCAACTGGATGGCAGCACCTGGGACTTCTGCAGTGAGGACTGTAAGAGCAAGTACCTGCTGTGGTACTGCAAG
Seq C2 exon
GCTGCCCGGTGCCATGCGTGTAAGCGCCAGGGGAAGCTGCTGGAGACCATCCACTGGCGTGGGCAGATCCGTCATTTCTGCAACCAGCAGTGTCTTCTGCGTTTCTATAGCCAGCAGAACCAACCCAACCTGGATACCCAGAGTGGGCCCGAGAGCCTCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.258
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)
A:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTGAGGACTTCAAGCG
R:
CAGGTTGGGTTGGTTCTGCTG
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)