Special

MmuEX6045437 @ mm10

Exon Skipping

Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101413112-101414054:-
Coord C1 exon
chrX:101413904-101414054
Coord A exon
chrX:101413489-101413661
Coord C2 exon
chrX:101413112-101413277
Length
173 bp
Sequences
Splice sites
3' ss Seq
GCCTGTTCTCTCCTTTCTAGGCT
3' ss Score
11.88
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACCAGGTCTTCCAGTTCTGCTGCCGTGATTGCTGTGAGGACTTCAAGCGGCTTCGGGGTGTGGTATCCCAGTGTGAGCACTGCCGGCAGGAAAAGCTCCTGCACGAGAAGCTTCGATTCAGTGGGGTAGAGAAAAGCTTCTGCAGTGAAG
Seq A exon
GCTGTGTACTGCTGTACAAGCAAGATTTTACTAAGAAGCTGGGCTTATGTTGTATCACCTGTACTTACTGTTCCCAAACCTGCCAGCGTGGTGTCACTGAGCAGCTGGATGGCAGCACCTGGGACTTCTGCAGCGAGGACTGTAAGACCAAGTACCTGTTATGGTACTGCAAG
Seq C2 exon
GCTGCCCGGTGCCATGCCTGTAAGCGCCAGGGGAAGCTGCTGGAAACGATCCACTGGCGTGGGCAAATCCGTCATTTCTGCAACCAACAGTGTCTGCTGCGTTTCTACAGCCAGCAGAACCAACCCAACTTGGATACCCAGAGTGGGCCAGAAAGCCTCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.268
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(84.6=64.7)

							
A:
PF064679=zf-FCS=PD(12.8=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)

							
C2:
PF064679=zf-FCS=PD(85.0=60.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068197





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000112497, ENSMUSP00000113049, ENSMUSP00000113225
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chrX:71247734-71247906 
HIGH PSI
HsaEX6052273
(ZMYM3)
Human
(hg19)
chrX:70467584-70467756 
HIGH PSI
HsaEX6052273
(ZMYM3)
Rat
(rn6)
chrX:71308110-71308282 
HIGH PSI
RnoEX0102026
(Zmym3)
Cow
(bosTau6)
chrX:84695804-84695976 
HIGH PSI
BtaEX6006460
(ZMYM3)
Chicken
(galGal4)
chr4:2279710-2279859 
ALTERNATIVE
GgaEX1065282
(ZMYM3)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr9:21632384-21632556 
HIGH PSI
DreEX6035996
(zmym2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTGCTGTGAGGACTTCAAGCG

				
R: 
TCCAAGTTGGGTTGGTTCTGC

				
Band lengths: 
256-429

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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