HsaINT0186018 @ hg19
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70470282-70471094:-
Coord C1 exon
chrX:70471028-70471094
Coord A exon
chrX:70470577-70471027
Coord C2 exon
chrX:70470282-70470576
Length
451 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCATCCCCCCACTTTCTCAGTTC
3' ss Score
6.45
Exon sequences
Seq C1 exon
AAGAGAAGCGAGCGCGTTAGGAGAGCAGAACCTCCAAAACCTGAGGTTGTAGATTCCACTGAGAGCA
Seq A exon
GTAAGTAGGATTTGAGGAAGTGTGACCTGGGAGTTCTGGGTGTGGAAAAGGTCCGAAAGTGGCATGCGGCAGGGCATGGATCTTCTAGCTCCTGCCGTCCTGCTCCATGAAGCGCATGAAGTGCCTGTCTCTGCTATGGGTTGGCATGGGAACCAGGGGCAGTGGGGGAAATTGAAAACAAGAGCAGTGAGAATGGCGAGTTTCCTGTTTCAGCTATGCCATCTCTGTCTCCGAATCTTCTCATTTAGAGCCTCTCCCTTTCCCTCCCTGGGAGGTTACAGAGTAACCAAGGGAGAGAGACACCAAGGTCTTAAGATACTGATGTAACAAGGGCCAGGGTGTAAAGGCCGGAACAACAGGGATCCCAGGAGAGGGACTGAACTGTTGGTCAGGGGATGGTTGGAGACCTGGTTTGGTGGCCTTTCTCATGTCCATCCCCCCACTTTCTCAG
Seq C2 exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGACCCCAATGATGAGGACTTTGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCCCTACGCTCAAGTGTGTCACAAAGGGCCGGGCGCTCTGCAGTGGGCACCAAGATGACTTGTGCACATTGCCGGACACCACTGCAGAAGGGGCAGACTGCCTATCAGCGCAAGGGGCTGCCTCAGCTCTTCTGCTCGTCATCCTGCCTCACCACTTTCTCCAAGAAGCCCTCGGGCAAAAAGACCTGTACCTTCTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-ZMYM3:NM_001171163:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=40.4),PF064679=zf-FCS=PU(28.9=13.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCGTTAGGAGAGCAGAA
R:
AGGTACAGGTCTTTTTGCCCG
Band lengths:
343-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)