GgaINT0075040 @ galGal4
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chr4:2273042-2274193:+
Coord C1 exon
chr4:2273042-2273111
Coord A exon
chr4:2273112-2273901
Coord C2 exon
chr4:2273902-2274193
Length
790 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TTCTCTCTGCTGCCGTGCAGTTC
3' ss Score
6.97
Exon sequences
Seq C1 exon
GAGAAAAGAAGTGAACGGGCCAGAAGATCAGAAACTGCCAGGCCTGAAACTGTGAACTCTGCTGAGAGCA
Seq A exon
GTGAGTAATCAGCATTGGCCATCACCTGCGTTCAGCCCTGGAGCAAGTCCTGGGCCCAGTACAGACAGGCAGTTTGTGTTGTGAACAGGGAGTAAGGACCATGGAGCTTTCATTTAGACATTCCTGTTGCGTAGGACAGGTCCTTCACCCCTAGAGTTTCCATTTCAGGATACTTCCCTTACTTCCTCAGGGTAAGGGAGGAGAGAGTAGCAGTATTTTCACATTGGTTTATAGGCAATAAGTACCGACTGATAATAGGATGAAACTCGGGGGATGTTCCCAGGGAATCCATCTGCCATTTCCTCAGCCAGAACTTTTCTTCCTTTGCCTCTATGCCATCAGGCTGTCTGAAGGAAAGTTGCATTCTGGGGACTTACCTGTAGAAATACAGGAAATCTGTGTCCTCCAGTGTGTGAGGTGTTGCACAGACATTGCATCTTTCTGTTGGTCAGTCATTGTCTGTGCTGGAGAAGTGGCTGGTGATCCAGTTTGTTCCCTTTAATGTTTACCGGTTCTTAAAGGGCTTCCTGTAGTAACGTTTACACTTTGGGCGTCTGCTCCACCTTATGACTTCTCCTAGAGAGAAACTTCACTTGCTTGAGGACCTCCCAACTCATCTCCAGTTCCAGCAGAGTCTCTTTTCAGGGTCTCTCCATCATTCTGCTTAGGAAGGCGCAAAGCCTTCAAACAACCTGCAGGAAGATGACCCCAGGAAGCCCCAGCACGCCTCTCGTGGCACAACTCTGTCTTAGTTCCTCACGGAGAATATCTTCTCTCTGCTGCCGTGCAG
Seq C2 exon
TTCCGGTCTCTGACGAAGACTCTGATGCAATGGTGGATGATCCCAACGATGAGGACTTTGTTCCTTTCCGTACCCGCCGCTCCACTCGCATGTCGTTGCGCACTCAGATAGCTCAGCGAGCCGCCCGCTCCTCTGCTGCCAAGATGACGTGTGCCAACTGCCGGACCCCGCTGCAGAAGGGCCAGACTGCCTACCAACGGAAGGGACTCCCTCAGCTCTTCTGCTCCAGCTCCTGTCTCACCACCTTCTCGAAAAGACCGCATGGCAAGAAGATGTGCACCTTCTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=41.8),PF064679=zf-FCS=PU(28.9=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGGCCAGAAGATCAG
R:
AAGGTGCACATCTTCTTGCCA
Band lengths:
343-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]