BtaINT0164761 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84692509-84693303:+
Coord C1 exon
chrX:84692509-84692575
Coord A exon
chrX:84692576-84693008
Coord C2 exon
chrX:84693009-84693303
Length
433 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCGCCCCCCCCCCCACCCAGTTC
3' ss Score
7.24
Exon sequences
Seq C1 exon
AAGAGAAGCGAGCGCGTTAGAAGAGTAGAGCCTCCAAAACCTGAGGTTGTGGATTCCACTGAAAGCA
Seq A exon
GTGAGTAGGACTTGAAGTGTGACCGGGTGGGATGTAGCCGGCATGGATCTCCCAGCTCCTGTGGTGCTGCACACCATGCAGAATGTGAAGCACCTATCTCTGCCCTGGATTGGCATGGGAACCTGGGGCAGTGGGGGAAATTGAAAACAAGAGCAGTGAGAATGGAGTTTCCTGTTTCAACTCTGCCATCCCTGTCCCCGAATCTTCTCACTTGGATCCCTACCTTCCCCTCCCTAGGACATTACAGAGTAACTAAGGGATGGTGACACCAGTAGCTTGAGATTCCAGTGTAATAGGGGCAGAGTGGAAAGCCAAGAACCATGGGGATTGGGGATCCCAGGATCAGCTGAACTACCTGCAGGTCAGGTGATGGCTGGAGGCCTGGTCCCTTAGCCTTTTCTCCCCACGCACCACCGCCCCCCCCCCCACCCAG
Seq C2 exon
TTCCAGTGTCAGATGAGGATTCTGATGCCATGGTAGATGATCCCAATGATGAGGACTTCGTGCCATTCCGGCCCCGGCGCTCTCCTCGCATGTCTCTACGCTCGAGTGTGGCACAGAGGGCCGGGCGCTCTTCAGTAGGCACCAAGATGACATGCGCCCACTGCCGGACACCGCTGCAGAAGGGCCAGACGGCCTACCAGCGCAAGGGGCTGCCTCAGCTCTTCTGCTCTTCATCCTGCCTCACCACTTTCTCCAAGAAGCCCTCTGGCAAAAAGACCTGCACCTTCTGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492:ENSBTAT00000011195:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=41.4),PF064679=zf-FCS=PU(28.9=13.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGTTAGAAGAGTAGAGCC
R:
AAGGTGCAGGTCTTTTTGCCA
Band lengths:
342-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]